Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00434 ATGAATGCTTCAAAGCCCTATAGGAAAAGGCATGAAGATTGCTCCCGTAGCACCTCGTCTGGCAAAGAATTGAAACGCTGGAAGGTGAACCGAACATTGGTGACATTTAGGAACTTGTTTGAGAAGCTAATGCATGAATACAAAGTGTACGAACCTGGGAATTCTAAGGTTAAGACAAAAGCTTTGATGGAGGCAGCAAGGACAATGAGAAGAGAACATCAATGGGAGAACACTCAAAAGTGCGTGGGGCATATACTAGGAATCGATGTCGGTGATGTCTTTCAGAACTGGGCTGAACTCAATGTCATTGGTCTCCATAGGCAATTTTGGAATGGGATTGATTATAAGGTAATGGACAACAGCTCATTGGCCACAAGCATTGTAGTAACGGATCGCTATGATAATGCTTGGAAATCCAATGGTACCTTGGTTTATGAAGGTCAAGGAGGAAATCCTAATGTTGGGAGAAATATTTCACTTATTGATCAAACATTGAAAGGGGGAAATTTGGCACTGAAAAATAGCATGCAAGCTAGAAGTCCCGTGAGAGTTATATTGAAAGTTTGTGGAAAGTTTGATGGTGAGTTCAGTAAAACTAGCAACAATTTTCATCACTCGTATGTGTATGATGGTTTGTATTTGGTGGATACAATGAAAATAGAAAGAGGGAAATATGGAAAGCTTGTGTTCAAGTTTGCACTAAATAGAATTTTAGTACAACCCCAAACTTGTGTTGCCCTTAAGGACCATGGCGAAAATTCAAGGCAACTTGCAAGTTTTACTCCTAGGAAGAAACACAAACCGAAAGGTTGTGTAGCTCAAAAGGAGGTTGTTCGCATTAAAGATCTTTCAAATGGTGGCGAGAAGTTTAGTGTTAGGGTGGTGACTTCAAGTGATTGTGTTCAGCTACCCACATCCTTTGATTATGTTGTAAATAACATTTACTCAAACAAGTTCAACCTGGCATTTCTTGGTGGCTGTGATTGTGCGGATGGGTGTGTTGACAAAGAAAGTTGTGTCTGCTTCAGGAAGAACGGTAGCAGAATGCCGAATGATTGCAATAAAAGACTTGCTTCTGACATGGAATCATCATTTATATATGAGTGTGGCCCATCTTGCAAGTGCTCCTCTTCTTGCATCAACCGAGTCACTCAGCATGGTATTCAGTTTCAGCTTGAAATCTTCAAGACAGAACTGAAAGGTTGGGGTGTTAGAACACGCTCTTTCATTCCCTCTGGAAGCTTTGTATGTGAGTATATTGGAGAAGTGAGTGACTATATGGAGGCTAGATGGAGGCTGGATGATGACTATATATTTCACATGGGTGTTGGAAAGGTCTTCATTAATGCAAGTAAATGTGGAAACGTTGGAAGATTTATAAATCATAGTTGTTCTCCAAATCTCTGTGTCAAAGATGTTATGTACGATCACAATGACAAGAGTCTTCCTCACAAAATGATGTTTGCTGTAAGGGACATAGCTGCTGGTAGAGAGCTGACTTATGATTATAATGACTCCAATGGAAAATTGATCAATTGTAAGAGTAATAGCTGCTACTGTGGAACACCGGAATGCAATGGACAGATCTACATTTAA 1596 0.4004 MNASKPYRKRHEDCSRSTSSGKELKRWKVNRTLVTFRNLFEKLMHEYKVYEPGNSKVKTKALMEAARTMRREHQWENTQKCVGHILGIDVGDVFQNWAELNVIGLHRQFWNGIDYKVMDNSSLATSIVVTDRYDNAWKSNGTLVYEGQGGNPNVGRNISLIDQTLKGGNLALKNSMQARSPVRVILKVCGKFDGEFSKTSNNFHHSYVYDGLYLVDTMKIERGKYGKLVFKFALNRILVQPQTCVALKDHGENSRQLASFTPRKKHKPKGCVAQKEVVRIKDLSNGGEKFSVRVVTSSDCVQLPTSFDYVVNNIYSNKFNLAFLGGCDCADGCVDKESCVCFRKNGSRMPNDCNKRLASDMESSFIYECGPSCKCSSSCINRVTQHGIQFQLEIFKTELKGWGVRTRSFIPSGSFVCEYIGEVSDYMEARWRLDDDYIFHMGVGKVFINASKCGNVGRFINHSCSPNLCVKDVMYDHNDKSLPHKMMFAVRDIAAGRELTYDYNDSNGKLINCKSNSCYCGTPECNGQIYI 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00434 531 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 6 523 - -
Phco6g00434 531 SUPERFAMILY PUA domain-like 65 245 IPR015947 -
Phco6g00434 531 ProSiteProfiles Pre-SET domain profile. 325 387 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco6g00434 531 SMART G9a_1 78 240 IPR003105 -
Phco6g00434 531 Pfam Pre-SET motif 284 382 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco6g00434 531 ProSiteProfiles Post-SET domain profile. 514 530 IPR003616 -
Phco6g00434 531 Gene3D - 64 262 IPR036987 -
Phco6g00434 531 Pfam SAD/SRA domain 82 237 IPR003105 -
Phco6g00434 531 MobiDBLite consensus disorder prediction 1 21 - -
Phco6g00434 531 SMART set_7 390 510 IPR001214 GO:0005515
Phco6g00434 531 SUPERFAMILY SET domain 272 510 IPR046341 -
Phco6g00434 531 ProSiteProfiles SET domain profile. 390 504 IPR001214 GO:0005515
Phco6g00434 531 Pfam SET domain 433 504 IPR001214 GO:0005515
Phco6g00434 531 Gene3D SET domain 272 530 IPR046341 -
Phco6g00434 531 SMART preset_2 280 374 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco6g00434 531 ProSiteProfiles YDG domain profile. 83 236 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00434 Phco-Chr6 4104430 4106096 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco6g00434 SAD_SRA 1e-36 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00434 6 4104430 4106096 Phco6g00434 6 4104430 4106096 ECH