Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00424 ATGGCAGAGTGGAAGAATTTGAGAGTTTTAGGAAAAGGTTCATATGCTGTGGTGTATCTTGCTAGAGTGATTCTTCCAAAAGAACACCACTGGAGGGTTGCAGCTGTAAAAACTTCAAATTCTTATTCTTATTCCTTTGATTCACTCCAAAAGGAGAAAAGGATATTGGAGTTATTCAAAGGTTGTAAAGAGATCCTCCAATATTATTTTTATCAGTATAGTGTGGAGGAAAGTTCCTTGATCTACAATCTTTTTATGGAGTTTGCTCCTTTTGGTTCTCTTGGTGATTTGATAAGAAAGGAGGCACTGCCAGAGAAGGAAGTGATCATCTATACTCATATGCTTCTCAAGGGACTATGCTGTATTCATAAAGAAGGAGTTGTTCACTGTGATCTCAAACCAGACAACATTCTTCTCTTTCCTTCATCTGATGCTCATGCAAAGTATCAACTAAAGATTGCTGATTTTGGATTGTCCAAAACTAGAGAAGAGACAAATGCTGACATAGGGAAGATCAGATTTAGAGGCACACCCTTCTACATGTCACCTGAATCTGTTGTAGGTCTTATGGAAGCATCCTTAGATGTATGGTCTCTTGGGTGTATTGTGATTGAGATGATCACTGGATTCCCAGCATGGTGTAATATACAAAACCAGAAAGAGCTAATGTGGAAGCTTGGATTCCTTCAAGAAGCACCAAAGATACCTAATGATCTGAATTGGGATTGCAAAAACTTCTTGAACAAGTGTTTTGTGAAGGACCCTAAGGAGAGATGGACAGCCAAAATGCTTCTTGATCATCCTTTCATACAAAAGGAATATCCAACCTCATCTACTTTTAATCCTTCATCTTTTTTCTCTTATGATATTGTTAGCTTTCGCCAAATCGAATCATCATCGGGTTTCCTTTTCCGGCACCGTCATCAGGATCATCTTAGAACTCTACTTTCACTTTTTTGCTTTATTTTCTCCCGCTTTCTCTACGATTTTCTCGGCAAAATTTTGGAGTTTCTACGGCTTTTCGCGCAGCGATCACTATCGGATTCGGACTCCGATTTCGCCTCGCGAATCGCTAGGGTTTTTTGGTTTTTTTTTCCCATGGAGGAGAAGAACGTGTGCGCGTCGGAGTCGGCGGTTGATGGAAGTCGCGATGTTTGGAGTTCGGAACCCTCGCTCGCGTCCTCCGCGGATCACCTCGTTGTGATGGTGAATGGAATTCTCGGACGTACAACGGATTGGAAATATGCCGCAGAGCAATTTGTCAAGGAGTTGCCTGATAAAGTGTTTGTTCACTGTAGCGAACGAAATGTGTCTATGCTCACACTAGATGGCGTGGATGTAATGGGGGAGAGATTAGCAGAAGAGGTGCTTGAAGTGATTCGAAGCAAGCCAAATATGCGTAGAATATCCTTTGTTGCACACTCTGTGGGAGGACTAGTGGCACGATATGCAATTGGGAGGCTGTATAGGCCACCTGAAAACGGTTCTATGAAGGACTCATGCAATGAGGAAAGTAAGGAGGGCTCAGTGGGCACAATAGGTGGCTTGGAGGCTATGAATTTCATTGCTGTGGCCACACCTCATTTAGGATCAAGGGGCAATAAGCAGGTTCCATTTCTTTTTGGGGTACCCGCTTTTGAGAAGGTTGCCAGTTGTGTTATTCATTTTATATTTAGAAGAACTGGTCGGCATCTTTTCCTTACTGATGATGATGAAGGAAAACCTCCATTGCTTAAACGCATGATTGAAGACTGCGGTGATTTGTATTTCATGTCTGCATTGCACAGTTTTAAGCGCCGATTTGCATATTCAAATGTGGACTATGATCATATTGTTGGCTGGAGAACGTCATCAATTAGACGTCAAAGTGAACTTGCAAATTGGAAGGATACTGTCAATGAAAAATATACACATGTTGTATATGAAGAGCACTGCAAGGCTTGTTCTGATGCTGAGCAGTATGACATATTGGAAGATAACAACTCTGACAAGATAGAAGAGGAGCTTGTAACAGGCTTATCTCGTGTGTCATGGGAAAAAGTAGATGTTAGCTTCCGCAATAGCAAGAATAGATTTGCTTCTCATACTATCATTCAGGTCAAAGACCAAATCACACAAATAGAAGGTGCAGATGTTATACAACATATGATTGATCATTTTCTTCTCTAG 2169 0.4131 MAEWKNLRVLGKGSYAVVYLARVILPKEHHWRVAAVKTSNSYSYSFDSLQKEKRILELFKGCKEILQYYFYQYSVEESSLIYNLFMEFAPFGSLGDLIRKEALPEKEVIIYTHMLLKGLCCIHKEGVVHCDLKPDNILLFPSSDAHAKYQLKIADFGLSKTREETNADIGKIRFRGTPFYMSPESVVGLMEASLDVWSLGCIVIEMITGFPAWCNIQNQKELMWKLGFLQEAPKIPNDLNWDCKNFLNKCFVKDPKERWTAKMLLDHPFIQKEYPTSSTFNPSSFFSYDIVSFRQIESSSGFLFRHRHQDHLRTLLSLFCFIFSRFLYDFLGKILEFLRLFAQRSLSDSDSDFASRIARVFWFFFPMEEKNVCASESAVDGSRDVWSSEPSLASSADHLVVMVNGILGRTTDWKYAAEQFVKELPDKVFVHCSERNVSMLTLDGVDVMGERLAEEVLEVIRSKPNMRRISFVAHSVGGLVARYAIGRLYRPPENGSMKDSCNEESKEGSVGTIGGLEAMNFIAVATPHLGSRGNKQVPFLFGVPAFEKVASCVIHFIFRRTGRHLFLTDDDEGKPPLLKRMIEDCGDLYFMSALHSFKRRFAYSNVDYDHIVGWRTSSIRRQSELANWKDTVNEKYTHVVYEEHCKACSDAEQYDILEDNNSDKIEEELVTGLSRVSWEKVDVSFRNSKNRFASHTIIQVKDQITQIEGADVIQHMIDHFLL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00424 722 Pfam Protein kinase domain 5 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00424 722 ProSitePatterns Protein kinases ATP-binding region signature. 10 37 IPR017441 GO:0005524
Phco6g00424 722 PANTHER UNCHARACTERIZED 374 719 IPR044294 -
Phco6g00424 722 Gene3D Transferase(Phosphotransferase) domain 1 1 315 - -
Phco6g00424 722 CDD STKc_MAPKKK 3 270 - -
Phco6g00424 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Phco6g00424 722 SMART serkin_6 4 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00424 722 Gene3D alpha/beta hydrolase 399 668 IPR029058 -
Phco6g00424 722 SUPERFAMILY Protein kinase-like (PK-like) 3 289 IPR011009 -
Phco6g00424 722 Pfam Putative serine esterase (DUF676) 394 616 IPR007751 -
Phco6g00424 722 FunFam putative lipase ROG1 isoform X1 399 642 - -
Phco6g00424 722 SUPERFAMILY alpha/beta-Hydrolases 396 646 IPR029058 -
Phco6g00424 722 ProSiteProfiles Protein kinase domain profile. 4 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00424 Phco-Chr6 3981953 3989528 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Phco6g00424 Pkinase 3.2e-47 CL0016