Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00420 ATGGCATCAAGCTCAATGTCAGCTACAGGATCATGGAGTGCTAAGGACAACAAGGCCTTTGAAAGGGCTCTAGCTGTTTATGACAAGGACACCCCTGACCGTTGGAACAATGTTGCCCTTGCTGTTGGTGGGAAAACCCCTGATGAAGTGAAAAGGCACTATGAGCTCCTCCTCCGAGACATTACCCAAATTGAATCAGGCCAAGTTCCATTCCCAAAGTACAAGAAAACTGCTGAGTCTGATGAAGAGGAGAAAAGGTACAACATTTTTCAACATCATTTATGCAGTGCTGAAAAACCTGGAGCTCCAGTGACCAGCCAATAG 324 0.4599 MASSSMSATGSWSAKDNKAFERALAVYDKDTPDRWNNVALAVGGKTPDEVKRHYELLLRDITQIESGQVPFPKYKKTAESDEEEKRYNIFQHHLCSAEKPGAPVTSQ 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00420 107 Pfam Myb-like DNA-binding domain 9 55 IPR001005 -
Phco6g00420 107 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Phco6g00420 107 CDD SANT 11 58 IPR001005 -
Phco6g00420 107 FunFam Transcription factor SRM1 4 71 - -
Phco6g00420 107 Gene3D - 2 71 - -
Phco6g00420 107 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Phco6g00420 107 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 84 IPR044636 GO:0003700
Phco6g00420 107 SMART sant 8 60 IPR001005 -
Phco6g00420 107 SUPERFAMILY Homeodomain-like 11 65 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00420 Phco-Chr6 3947052 3947614 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco6g00420 Myb_DNA-binding 1.1e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01406 2 43221903 43224794 Phco6g00420 6 3947052 3947614 PCT