Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00405 ATGCAGCATCAGATGGAGATGGAGAACTCTGATGAGCTCTTTCAGTTCCTCTCAAACACCAATGATTCTTTCTTTCCTGAACCTGCATCATCAATCATGCAACAAAGCTTCTCTGCTTCCTTTTCTTATTACCCTCTCCAACCTTTTAATGCATCACCCCATCAAGATAAAGCCCTTGCTGCTTTGAGGAACCACAAAGAGGCTGAGAAGAGAAGAAGGGAAAGAATCAATGCCCACCTCAATAAGCTTCGCACTCTTCTTCCTTGTAATTCCAAGACCGACAAGGCTTCACTCTTGGCTAAGGTGGTGGAAAGGTTGAAGGAGTTGAAGCAGCAGATATCTGAAATAACCCAATCCGAAACGTTTCCTTCGGAGACCGACGAGATCTCCGTTCTGTCCACCAGCGGTGACGGGAGTGACGGTGACGGACGAGTCATATTCAAGGCCTCGTTGTGCTGTGAGGACCGCTCCGACCTCATCCCTGACCTCGTCGAAATTCTCAAGTCTCTTCACCTCACAACGCTCAAAGCCGAAATCGCAACGCTCGGAGGAAGAACCCGCAACGTTCTCGTGGTGGCCACCGACAAAGATCACAGCGTTGAATCAATCCACTTCCTGCAAAACTCGTTGCACACTCTGCTACAACACAACGGCGCATCCAAACGACGCCGTGCCGTAGGACCAAAGTTCATCGTTTAA 699 0.4907 MQHQMEMENSDELFQFLSNTNDSFFPEPASSIMQQSFSASFSYYPLQPFNASPHQDKALAALRNHKEAEKRRRERINAHLNKLRTLLPCNSKTDKASLLAKVVERLKELKQQISEITQSETFPSETDEISVLSTSGDGSDGDGRVIFKASLCCEDRSDLIPDLVEILKSLHLTTLKAEIATLGGRTRNVLVVATDKDHSVESIHFLQNSLHTLLQHNGASKRRRAVGPKFIV 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00405 232 Coils Coil 99 119 - -
Phco6g00405 232 FunFam transcription factor bHLH30 55 118 - -
Phco6g00405 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 121 IPR036638 GO:0046983
Phco6g00405 232 CDD bHLH_AtAIG1_like 55 131 - -
Phco6g00405 232 PANTHER TRANSCRIPTION FACTOR BHLH30 9 226 IPR045847 GO:0003700|GO:0006355
Phco6g00405 232 Coils Coil 59 79 - -
Phco6g00405 232 CDD ACT_UUR-ACR-like 150 214 - -
Phco6g00405 232 Pfam Helix-loop-helix DNA-binding domain 64 109 IPR011598 GO:0046983
Phco6g00405 232 SMART finulus 66 115 IPR011598 GO:0046983
Phco6g00405 232 Gene3D - 55 121 IPR036638 GO:0046983
Phco6g00405 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00405 Phco-Chr6 3855230 3856522 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco6g00405 HLH 5.1e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00405 6 3855230 3856522 Phco6g00405 6 3855230 3856522 ECH
Phco2g01415 2 43393611 43394863 Phco6g00405 6 3855230 3856522 PCT