Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00404 ATGGGAATCTGCCATGGAAAACCCATCGAGACCCAACAAAGTGAGAGAGAAAACCCAGAATTCCCGAACGAAGTTCCATCATCAACAAACCCCAAAGCCTCGAAATTCCCATTCTACAGCCCGAGCCCTTTACCCAGTTGGTTCAGAAACTCGCCGGCGAACTCAAACCCTAGCAGCGTGAGTTCCACACCGTTAAGGATCTTCAAGCGCCCCTTCCCTCCTCCCTCGCCGGCGAAGCACATTCGCGCGCTCCTCGCTCGGCGCCACGGCTCCGTGAAGCCGAACGAAGCCTCCATACCTGAAGGCAGCGAGTGTGAGATTGGGTTGGATAAGAGCTTCGGCTTCGCCAAACACTTCTCGGCCCATTACGAGATCAGCGAAGAAGTGGGCCGCGGGCATTTTGGCTACACCTGCTCTGCCAAGCCCAAGAAGGGCCCCTTCAAAGCCATCGACGTTGCCGTCAAAGTCATTCCAAAATCCAAGATGACCACAGCAATTGCTATAGAGGATGTAAGGAGAGAAGTGAAGATATTGAGGGCTCTAACAGGACACAAGAATCTGGTGCAATTCTATGAAGCCTATGAAGATGATGACAACGTTTATATAGTTATGGAGTTATGCAAAGGAGGGGAATTGCTAGATAGGATTCTTTCCAGGGGTGGAAAGTACCCAGAAAATGATGCCAGAGTAGTTATGATCCAAATATTGAGTGTGGTAGCTTTTTGTCATCTTCAGGGTGTTGTTCACCGTGATCTCAAGCCAGAGAATTTTCTTTTCACTTCTAAGGATGAAAATTCCACGTTGAAGGCCATTGATTTTGGATTGTCTGACTATGTGAAGCCAGATGAGAGGTTGAATGATATTGTTGGAAGTGCTTATTATGTAGCTCCAGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCTTATATTCTTTTATGTGGGAGCCGTCCCTTTTGGGCTCGGACTGAATCTGGTATATTTCGGGCTGTACTTAAGGCAGATCCAAGTTTTGATGAGGCTCCTTGGCCTTCTTTGTCTGCTGATGCAAAAGATTTTGTAAAGAGGTTGTTGAATAAGGATTATCGTAAAAGATTGACTGCAGCTCAGGCACTAAGTCATCCATGGCTGGTGAATCACCATGATGATATGAGGATACCTTTGGATATGATAATCCACAAGCTTGTTAAAGCTTACATTTGCTCATCTTCTTTACGTAAATCTGCTTTAAGGGCTCTTGCAAAGACATTAACAGTAGCTCAGCTAGCTTATCTCAGAGATCAATTTACTTTGTTAGGGCCAAACAAGAGTGGATTAATCTCTATGCAGAACTTTAAGACGGCTGTTTTGAGGAGCTCCACAGATGCTTCAAAGGATTCACGGGTCTTAGATTATGTGAATATGGTTAGTTCTATCCAATATAGGAAACTAGATTTTGAGGAATTTTGTGCTGCTGCTATAGGTATGCACCAACTAGAGGGAATGGAGAGCTGGGAGCAGCATGCAAGGCGAGCCTATGAGCTTTTTGAAAAGGAAGGAAATAGACCAATTATGATAGAGGAACTTGCCTCGGAACTTGGGCTTAGTCCATCAGTACCTGTTCATGTAGTACTTCAAGATTGGATAAGGCACTCAGATGGGAAGCTTAGTTTCTTGGGGTTTGTCAGGCTTCTGCATGGGGTTTCTTCCCGTGCATTTCAGAAGGCCTGA 1734 0.4527 MGICHGKPIETQQSERENPEFPNEVPSSTNPKASKFPFYSPSPLPSWFRNSPANSNPSSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPEGSECEIGLDKSFGFAKHFSAHYEISEEVGRGHFGYTCSAKPKKGPFKAIDVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDDNVYIVMELCKGGELLDRILSRGGKYPENDARVVMIQILSVVAFCHLQGVVHRDLKPENFLFTSKDENSTLKAIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSADAKDFVKRLLNKDYRKRLTAAQALSHPWLVNHHDDMRIPLDMIIHKLVKAYICSSSLRKSALRALAKTLTVAQLAYLRDQFTLLGPNKSGLISMQNFKTAVLRSSTDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAIGMHQLEGMESWEQHARRAYELFEKEGNRPIMIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRAFQKA 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00404 577 SUPERFAMILY EF-hand 414 568 IPR011992 -
Phco6g00404 577 Pfam Protein kinase domain 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00404 577 MobiDBLite consensus disorder prediction 15 36 - -
Phco6g00404 577 FunFam CDPK-related kinase 1 397 569 - -
Phco6g00404 577 Gene3D Transferase(Phosphotransferase) domain 1 213 405 - -
Phco6g00404 577 ProSitePatterns Protein kinases ATP-binding region signature. 129 155 IPR017441 GO:0005524
Phco6g00404 577 FunFam CDPK-related kinase 3 115 287 - -
Phco6g00404 577 Gene3D Phosphorylase Kinase; domain 1 116 212 - -
Phco6g00404 577 SUPERFAMILY Protein kinase-like (PK-like) 113 419 IPR011009 -
Phco6g00404 577 CDD STKc_CAMK 122 384 - -
Phco6g00404 577 PANTHER SERINE/THREONINE-PROTEIN KINASE 110 553 - -
Phco6g00404 577 SMART serkin_6 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00404 577 ProSiteProfiles Protein kinase domain profile. 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00404 577 FunFam CDPK-related kinase 1 116 211 - -
Phco6g00404 577 MobiDBLite consensus disorder prediction 1 37 - -
Phco6g00404 577 FunFam Calcium-dependent protein kinase SK5 295 390 - -
Phco6g00404 577 Gene3D - 406 568 - -
Phco6g00404 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00404 Phco-Chr6 3836501 3848248 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Phco6g00404 Pkinase 2.9e-69 CL0016