Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00386 ATGCGTCATGCATGCTTACAGTTGATACTTCGTAGTGGATGGGAACCGACACCTTCTAATATCAGCCGTACACTTGGCCATCAAGACTATCAACGGTTGAGATGCAGAATCCAAAAGTTTGTCGATCTACAATTTCGAAGCTGTATATTAATCAATACTCCAGTACGGAAGCTTACTACGCCCGAACCTCTCCTCAGCTTCGTTAATTTTGCTTCGGAACGGGAAATCATGGCACAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAGAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCTGTTGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCGCGGACAAATGAGAAACATTCAGAGACCGCTGCAGCATATTTGGAGGCACAACAGAATAAAGTGAAAGAACAACAGCAACTGCAAATGCAGCAGTTGCAATTCATTCGTCAAGCTCAACTTCAAAGAAGGGATTCTAATCATCCTCCCCTTGGAGGCCCTGTAAATACTATCAATACAGAAGGAGTGCTTGGGCAATCTACTGCAAGCGCTTTGGCTGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACTGCAGCTTTGCAGCAAATCCAGGCTCGAACTCAGCAAACCCCTGATATCAAAGGTGAAGTCAACATGGGTGCCATGCAGAGATCCTTGCCTATGGATCCTTCATCAATTTACGGGCAGGGAGGAATGCAGTCAAAGCCTGGCATTGCAAATGCAGGATTAAATGCTGGAGTAGGTAGTCTCACATTGAAAGGATGGCCTTTAACTGGTATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTACCTCAACAACAGCAACAACAGCTCCTTGCACAGGTACAGGCACAAGGAAATATTGGCAATTCACCAGTTTATGGAGATATGGATCCACAACGATTAAGGGGATTAACTAGGGGAAGTTTGAATGCTAAAGATGGTCAATCAATTGCAAATGATGGATCTATAGGCTCTCCAATGCAATCTACTTCATCAAAGATCAACATGCCACAGATCCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAACAATTGATGCAGAATAACCGGAAAAGGAAGGGGCCTACATCTTCAGGACCTGCAAACAGTACTGGAACAGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACTCCATCGACTCATACACCCGGTGACGGAGTTGCAATGGCGGGTAACTTGCAAAATGTTGCTGGTGTATCCAAAGGTTTGATAATGTATGGTACTGATGGAGCGGGTGGTCTTGCATCTTCCACAAATCAACTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGGACGTTGAAACGGAACCCTTCAGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTCAGTGAAGTTAGTTCTATACGCAAAAGCAACAGCAAAGTTGTTTGCTGCCATTTCTCTTCAGATGGAAAATTATTGGCTAGTGCCGGCCATGACAAAAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACAGAGAGTACTCCAGAGGAACACAATCTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACATCTTCATTTGATACAACTGTTCGGTTGTGGGATGCTGCAGATCCAACCTTTTGTTTACAGGCATATAGTGGTCATACTTCACATGTGGTGTCCCTTGATTTTCACCCAAAGAAAAATGATCTTTTCTGTTCCTGTGATGATAACAACGAGATTCGTTTCTGGAATATTAGCCAATATTCTTGCACCCGACTTTTTAAGGGAGGATCTACCCAGGTGAGGTTTCAGCCAAGGGTTGGTCAATTTCTGGCTGCAGCAAGTGGTAGTGTTGTGTCTCTCTTTGATGTCGAGACTGATAGGCAGATGCACACATTTCAGGGACACTCTGCAGAGGTACATTGCGTCTGTTGGGATACAAATGGAGATTACTTGGCATCTGTTAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCATCTGGGGAGTGCATTCATGAACTTAATTCCAGTGGAAACATGTATCATTCTTGTGTTTTTCACCCAAGCTACTCAACTCTGTTGGTTATTGGAGGATACCAGTCATTGGAGCTATGGAACATGGTTGAGAATAGATGTATGACAATTTCAGCTCATGAGTGTGTGATATCTGCATTAGCACAATCACCCGTAACAGGGATGGTTGCTTCTGCCAGTCATGACAAATCTGTAAAGATTTGGAAATAA 2586 0.4331 MRHACLQLILRSGWEPTPSNISRTLGHQDYQRLRCRIQKFVDLQFRSCILINTPVRKLTTPEPLLSFVNFASEREIMAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQNKVKEQQQLQMQQLQFIRQAQLQRRDSNHPPLGGPVNTINTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPDIKGEVNMGAMQRSLPMDPSSIYGQGGMQSKPGIANAGLNAGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLTRGSLNAKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLMQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGNLQNVAGVSKGLIMYGTDGAGGLASSTNQLLQDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVSSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHNLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFCLQAYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRFWNISQYSCTRLFKGGSTQVRFQPRVGQFLAAASGSVVSLFDVETDRQMHTFQGHSAEVHCVCWDTNGDYLASVSQESVKVWSLASGECIHELNSSGNMYHSCVFHPSYSTLLVIGGYQSLELWNMVENRCMTISAHECVISALAQSPVTGMVASASHDKSVKIWK 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00386 861 Gene3D - 708 861 IPR015943 GO:0005515
Phco6g00386 861 MobiDBLite consensus disorder prediction 376 489 - -
Phco6g00386 861 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 622 654 - -
Phco6g00386 861 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 77 861 IPR044716 GO:0003714
Phco6g00386 861 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 829 861 - -
Phco6g00386 861 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 621 IPR001680 GO:0005515
Phco6g00386 861 Pfam WD domain, G-beta repeat 621 654 IPR001680 GO:0005515
Phco6g00386 861 Pfam WD domain, G-beta repeat 743 778 IPR001680 GO:0005515
Phco6g00386 861 Pfam WD domain, G-beta repeat 661 698 IPR001680 GO:0005515
Phco6g00386 861 Pfam WD domain, G-beta repeat 828 861 IPR001680 GO:0005515
Phco6g00386 861 Pfam WD domain, G-beta repeat 585 612 IPR001680 GO:0005515
Phco6g00386 861 SMART WD40_4 822 861 IPR001680 GO:0005515
Phco6g00386 861 SMART WD40_4 701 737 IPR001680 GO:0005515
Phco6g00386 861 SMART WD40_4 740 778 IPR001680 GO:0005515
Phco6g00386 861 SMART WD40_4 573 612 IPR001680 GO:0005515
Phco6g00386 861 SMART WD40_4 781 820 IPR001680 GO:0005515
Phco6g00386 861 SMART WD40_4 658 698 IPR001680 GO:0005515
Phco6g00386 861 SMART WD40_4 615 654 IPR001680 GO:0005515
Phco6g00386 861 SUPERFAMILY WD40 repeat-like 574 861 IPR036322 GO:0005515
Phco6g00386 861 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 665 700 - -
Phco6g00386 861 SMART Lish 84 116 IPR006594 GO:0005515
Phco6g00386 861 MobiDBLite consensus disorder prediction 396 483 - -
Phco6g00386 861 ProSiteProfiles Trp-Asp (WD) repeats profile. 747 787 IPR001680 GO:0005515
Phco6g00386 861 ProSitePatterns Trp-Asp (WD) repeats signature. 599 613 IPR019775 -
Phco6g00386 861 Gene3D - 536 707 IPR015943 GO:0005515
Phco6g00386 861 Coils Coil 154 174 - -
Phco6g00386 861 ProSiteProfiles LIS1 homology (LisH) motif profile. 84 116 IPR006594 GO:0005515
Phco6g00386 861 ProSiteProfiles Trp-Asp (WD) repeats profile. 665 707 IPR001680 GO:0005515
Phco6g00386 861 ProSiteProfiles Trp-Asp (WD) repeats profile. 829 861 IPR001680 GO:0005515
Phco6g00386 861 ProSiteProfiles Trp-Asp (WD) repeats profile. 622 654 IPR001680 GO:0005515
Phco6g00386 861 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 580 615 - -
Phco6g00386 861 PRINTS G protein beta WD-40 repeat signature 641 655 IPR020472 -
Phco6g00386 861 PRINTS G protein beta WD-40 repeat signature 848 861 IPR020472 -
Phco6g00386 861 PRINTS G protein beta WD-40 repeat signature 599 613 IPR020472 -
Phco6g00386 861 CDD WD40 576 861 - -
Phco6g00386 861 Pfam LisH 86 112 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00386 Phco-Chr6 3668026 3685726 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Phco6g00386 WD40 0.00046 CL0186