Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00378 ATGGCGAACGGCGGAAAACGCGAGCGCGACAGCGGCGCCGGTGGAGTTCTGCGGTGCGGTTCGGATCTTGTATACTTGGACCATGCTGGGGCAACTCTATACTCTGACCTGCAAATGGAATCAGTTTTCAACGATCTCACCATTAACGTATATGGATATCCTTATAGCCAAAGGGACTCCAGTTCTGCAACTCTTGACATTGTGAAGAATGCCTGCCAATATGGGCAATGGATGGTCTTAATTGATGCTGCAAAGCGATGTGCTACTGTGCTGCCTGATTTGTCTAAGTATCGTGCTGATTTTGTTGCTATCTCATTTTACAAGCCAATTGGGCTTGGAGCTCTCATCGTTCAAAATGGGACCTTAGACGACACTGTTTTCGTCATGGGTGATTTTTGTGACCCCAGAGGAAAGTTTGAAATGTATAGTGGATGCAAGTTTACGGCAGAAGAAGAGAGACTGGTGATAGAGTTACAGGCACAGTTTGGGAACAAATGGGCGAAAATTGCTATGTATTTGGCAGGGAGAACGGGCAATGATGTGAAAAACCTTTGGAGCAGTAGGAGAAAAAGGTTGGAGAGGATGTTGCAGAAGCCACCAACGTTAAAGCTGCAGAAAAACAAGGGAAAAACACCTCTTACTCAACTTCTAGTGGATAAAGCTCCATGCAGTTCAAATGAGGTGGAGGAAAACCTTTCTTATCCTACTTCCTACATGGGAAACACTGATGTGTTCGAGATTATCAAACTTCCAGATTTGATAAAGCCAAACTATTAA 777 0.4453 MANGGKRERDSGAGGVLRCGSDLVYLDHAGATLYSDLQMESVFNDLTINVYGYPYSQRDSSSATLDIVKNACQYGQWMVLIDAAKRCATVLPDLSKYRADFVAISFYKPIGLGALIVQNGTLDDTVFVMGDFCDPRGKFEMYSGCKFTAEEERLVIELQAQFGNKWAKIAMYLAGRTGNDVKNLWSSRRKRLERMLQKPPTLKLQKNKGKTPLTQLLVDKAPCSSNEVEENLSYPTSYMGNTDVFEIIKLPDLIKPNY 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00378 258 PANTHER TRANSCRIPTION FACTOR DUO1 141 253 - -
Phco6g00378 258 Gene3D - 49 145 IPR015421 GO:0003824
Phco6g00378 258 SUPERFAMILY Homeodomain-like 144 193 IPR009057 -
Phco6g00378 258 FunFam Transcription factor GAMYB 145 213 - -
Phco6g00378 258 SUPERFAMILY PLP-dependent transferases 67 126 IPR015424 -
Phco6g00378 258 Gene3D - 146 215 - -
Phco6g00378 258 CDD SANT 146 185 IPR001005 -
Phco6g00378 258 Pfam Myb-like DNA-binding domain 146 185 IPR001005 -
Phco6g00378 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 145 193 IPR017930 -
Phco6g00378 258 ProSiteProfiles Myb-like domain profile. 146 189 IPR001005 -
Phco6g00378 258 SMART sant 143 191 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00378 Phco-Chr6 3584910 3593748 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco6g00378 Myb_DNA-binding 5.9e-10 CL0123