Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00345 ATGTCCCTCGAAGACTCTCTAAGATCTCTCTCTCTCGACTACCTCAACCTTCTCATCAATGGCCAGGCCTTCAGCGACGTCACTTTCCAAGTCGAGGGCCGTCTCGTCCACGCGCACCGCTGCATCTTGGCCGCGCGCAGCCTCTTCTTCCGCAAATTCTTTTGCGGCCCCGACTCTCCACCAGGCCTCGACCCCGCCGCCGCTTCGCGAGCCTCCGCCGCCTCCGGAGCGCGTCCTCCCGGCGTGATCCCGGTGAACTCGGTCGGCTACGAGGTTTTCTTGCTGCTGCTGCAGTTCCTGTACAGTGGACAAGTCTCCATCGTGCCGCAGAAGCACGAGGCCAGACCCAATTGCGGCGAGCGAGGGTGCTGGCACACGCATTGCACCTCCGCCGTTGATCTCGCCCTCGACACCCTCGCTGCCGCCAGATACTTCGGCGTTGAACAACTTGCATTGCTCACTCAGAAACAACTTGCGAGCATGGTGGAGAAAGCCTCAATCGACGATGTGATGAAAGTGTTGATAGCATCTCGAAAGCAGGAAATGCAGCAGCTGTGGAGCACGTGTTCCCACCTGGTGGCCAAGTCAGGTCTTCCGCCGGAGGTGCTGGCCAAGCACCTCCCCATGGACGTCGTGGCCAAGATCGAGGAGCTCCGGCTCAAATCCTCCCTCGCGCGCCGCTCCATGCTGCCGCTCCGCCACCCGCACCAACACCCCGACCTGGGCGCCGCCGACATGGAGGACCAGAAAATCCGGCGGATGAGGCGTGCGCTCGACTCCTCCGACGTGGAACTTGTGAAGCTCATGGTCATGGGGGAGGGCCTGAACCTGGACGAGGCGCTGGCGTTGCACTACGCCGTGGAGAGTTGCAGCAGGGAGGTGGTGAAGGCGCTGCTGGAGCTGGGCGCGGCGGACGTGAACTTCCCGGCAGGGCCGGCCGGGAAGACTCCTCTGCATGTGGCGGCGGAGATGGTATCCCCAGAGATGGTGGCGGTGTTGCTGGACCACCACGCTGACCCGAATGTACGAACGGTGGATGGCGTGACCCCGTTGGACATCCTCAGAACCCTAACCTCTGACTTCCTCTTCAAAGGGGCACTCCCTGGTCTCACCCACATTGAGCCCAACAAGCTCAGGCTCTGCTTGGAGCTCGTGCAATCTGCAGCCCTCGTTTTGTCTCGTGAAGAAGGGAACAACCATGCTAACAACAACAACAACGACAATACTAACAACACCAACACTTCTGCTTCTGCAACTGCTATCTATCCACCAATGAGTGAAGAGCACAGCAGCAGCAATTTGGACTCCAGACTGGTGTATCTCAACCTCGGCGCCACGCCACAAATAGGTGACGATGATAACAGCCAGAGGGAAGCCATGAACCGTCATGGCTCGCATGGCAGTGGATGTGACCCATCAATGTACCATCACTCTCATGACTTCTAG 1446 0.5954 MSLEDSLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDSPPGLDPAAASRASAASGARPPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIDDVMKVLIASRKQEMQQLWSTCSHLVAKSGLPPEVLAKHLPMDVVAKIEELRLKSSLARRSMLPLRHPHQHPDLGAADMEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVESCSREVVKALLELGAADVNFPAGPAGKTPLHVAAEMVSPEMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGALPGLTHIEPNKLRLCLELVQSAALVLSREEGNNHANNNNNDNTNNTNTSASATAIYPPMSEEHSSSNLDSRLVYLNLGATPQIGDDDNSQREAMNRHGSHGSGCDPSMYHHSHDF 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00345 481 ProSiteProfiles BTB domain profile. 25 109 IPR000210 GO:0005515
Phco6g00345 481 ProSiteProfiles Ankyrin repeat region circular profile. 313 343 - -
Phco6g00345 481 Pfam Domain of unknown function (DUF3420) 197 255 IPR024228 -
Phco6g00345 481 FunFam regulatory protein NPR5 isoform X2 244 361 - -
Phco6g00345 481 MobiDBLite consensus disorder prediction 397 417 - -
Phco6g00345 481 SMART ANK_2a 278 308 IPR002110 GO:0005515
Phco6g00345 481 SMART ANK_2a 313 342 IPR002110 GO:0005515
Phco6g00345 481 FunFam regulatory protein NPR5 isoform X1 4 195 - -
Phco6g00345 481 SUPERFAMILY POZ domain 8 160 IPR011333 -
Phco6g00345 481 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 481 IPR044284 GO:0099402
Phco6g00345 481 MobiDBLite consensus disorder prediction 445 481 - -
Phco6g00345 481 CDD BTB_POZ_NPR_plant 8 162 - -
Phco6g00345 481 Pfam Ankyrin repeats (3 copies) 261 343 IPR002110 GO:0005515
Phco6g00345 481 Pfam BTB/POZ domain 16 111 IPR000210 GO:0005515
Phco6g00345 481 SUPERFAMILY Ankyrin repeat 272 356 IPR036770 -
Phco6g00345 481 Gene3D - 245 361 IPR036770 -
Phco6g00345 481 ProSiteProfiles Ankyrin repeat profile. 313 345 IPR002110 GO:0005515
Phco6g00345 481 Gene3D Potassium Channel Kv1.1; Chain A 4 195 IPR011333 -
Phco6g00345 481 SMART BTB_4 25 162 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00345 Phco-Chr6 3277889 3281283 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Phco6g00345 BTB 4.4e-15 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00345 6 3277889 3281283 Phco6g00345 6 3277889 3281283 ECH
Phco2g01445 2 43930706 43933152 Phco6g00345 6 3277889 3281283 PCT