Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00301 ATGCGTGAACGGCAAAGTCTTGATGAAGCTGAAGATACTCCGAGTTCTATATGCATTTTGCAGAGGCAGATCGTGCATCCATTGCTCTCTGTCTTCCCTAACTGTGCAGGCCTCCATTTCCACACTGCTCTGACTTCGAAATCTGGGTGTTTGGTGAGGAAGGATAATAAAGGAAGGATCTTTGTGAGAGGAAGAGTAAAAGACATGGGGAGGGGGAAGATTGAGATTAAGAAAATTGAGAATTTGAACAGCAGACAGGTTACCTTTTCTAAGAGGAGGAATGGTTTGCTGAAGAAGGCCAGAGAATTGTCTGTTCTATGTGATGCTGAGGTTGCTGTCATCATATTCTCTAGCACTGGCAAGCTTTATGAGTTTTCAAACACAAGCATGGAACATACCATTTCAAGGTATAGCAAAGGGACAGACTTGGATTCTGCAGAGCAACCTATTGATGTGCCCCCAAAAGATGTTATGGTTATGGAGCCTGATACTAACCTTTTGAAGGATGAAATAACAAAGCTTCGATCGGCATACTTAAATATGATGGGTAAGGAGCTTGATGGGTTGAGCCTTAAGGAATTGCAGCACCTAGAAAATCAACTGAGTGAAGGGATACTAGCTGTCAAAGACAAAAAGGAACAAGTACTTGTAGAACAGCTTAGGAGGTCCAGGATACAGGAGCAGAAAGCTGTGCTGGAAAATGAAGTTCTGCGCAAACAGCTTGAGGAGATACAAAATAAAACAAAAACACCATTCCTTGAATTCAGTTCTTTGGATAGGAGTTTTTCCAAGAACAGTTCAAAATCTCCTTTCAATTGTGCTTCAGAGGAAAATGATCATTCAGATACTTCTTTGCAGTTAGCGTTGTCAACAGATTATGGTCGGCAGAGGAAAGGATTGAAAATAGAAGCTTGCAACGACTCAGGGAGTCAAGTGGCTTCGCAGTGA 948 0.4209 MRERQSLDEAEDTPSSICILQRQIVHPLLSVFPNCAGLHFHTALTSKSGCLVRKDNKGRIFVRGRVKDMGRGKIEIKKIENLNSRQVTFSKRRNGLLKKARELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHTISRYSKGTDLDSAEQPIDVPPKDVMVMEPDTNLLKDEITKLRSAYLNMMGKELDGLSLKELQHLENQLSEGILAVKDKKEQVLVEQLRRSRIQEQKAVLENEVLRKQLEEIQNKTKTPFLEFSSLDRSFSKNSSKSPFNCASEENDHSDTSLQLALSTDYGRQRKGLKIEACNDSGSQVASQ 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00301 315 Coils Coil 222 247 - -
Phco6g00301 315 MobiDBLite consensus disorder prediction 261 284 - -
Phco6g00301 315 Coils Coil 194 214 - -
Phco6g00301 315 CDD MADS_MEF2_like 70 144 IPR033896 GO:0000977|GO:0045944
Phco6g00301 315 PANTHER SERUM RESPONSE FACTOR HOMOLOG 71 254 - -
Phco6g00301 315 FunFam MADS-box transcription factor MADS-MC 81 151 - -
Phco6g00301 315 SUPERFAMILY SRF-like 70 144 IPR036879 GO:0003677|GO:0046983
Phco6g00301 315 ProSiteProfiles K-box domain profile. 157 247 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco6g00301 315 Gene3D - 81 148 IPR036879 GO:0003677|GO:0046983
Phco6g00301 315 PRINTS MADS domain signature 91 106 IPR002100 GO:0003677|GO:0046983
Phco6g00301 315 PRINTS MADS domain signature 106 127 IPR002100 GO:0003677|GO:0046983
Phco6g00301 315 PRINTS MADS domain signature 71 91 IPR002100 GO:0003677|GO:0046983
Phco6g00301 315 ProSiteProfiles MADS-box domain profile. 69 129 IPR002100 GO:0003677|GO:0046983
Phco6g00301 315 SMART madsneu2 69 128 IPR002100 GO:0003677|GO:0046983
Phco6g00301 315 Pfam K-box region 163 241 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco6g00301 315 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 78 125 IPR002100 GO:0003677|GO:0046983
Phco6g00301 315 ProSitePatterns MADS-box domain signature. 71 125 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00301 Phco-Chr6 2954733 2964263 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco6g00301 K-box 6e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00301 6 2954733 2964263 Phco6g00301 6 2954733 2964263 ECH