Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00298 ATGGAGGAAGAAAGTGAGAAAGGGTTGTTGGAGTGTATGAGAAAATTGTCAACACCACCCTTCTTGTTGAAGACATACATGTTGGTTGAGGATTCCACCACCAATGATGTTGTGTCGTGGAATGATGATGGAACAACGTTTGTGGTGTTGCAACCTGCAGAGTTTGCTCGTGATCTTCTTCCAACTCTCTTCAACCATTGCAACTTCTCTAGCTTCCTTCGCCAGCTCAGTACTTATGGTTTTCGTAAAGTTGCAACAAGCAAATGGGAGTTTTGCAACGAGCGATTCAGAAAGGGTGAGAAAGAACTACTATGCGAGATTAGACGTAAGAAATCATGCGTGAGGAAGAGGCAACACACCAATATTGCACCAATCCAAGACTCAGATGAAGATCAAAGGTCCTTAGTATCAGCCTTTTCTTCAAATTATGCAGTTCTCATGGATCAAAACAAGCGACTGAAGAAGGAGAATGGGGTGTTGCAATCAGAGCTCACAACCATGAAGAGGAAGTGCAGGGATTTGCTGGATTTGGTGACCAAATATTCATGTGCAATGGAAGAACGGGTGGATGAGAAACCGTTGTCGTTTCGGGTGAGATTGGAAGAAGCTCAAAGAGAAAGGGAGATTAACAGAGGAAGAAAATAG 645 0.4326 MEEESEKGLLECMRKLSTPPFLLKTYMLVEDSTTNDVVSWNDDGTTFVVLQPAEFARDLLPTLFNHCNFSSFLRQLSTYGFRKVATSKWEFCNERFRKGEKELLCEIRRKKSCVRKRQHTNIAPIQDSDEDQRSLVSAFSSNYAVLMDQNKRLKKENGVLQSELTTMKRKCRDLLDLVTKYSCAMEERVDEKPLSFRVRLEEAQREREINRGRK 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00298 214 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g00298 214 Gene3D - 13 111 IPR036388 -
Phco6g00298 214 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Phco6g00298 214 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g00298 214 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g00298 214 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g00298 214 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g00298 214 FunFam Heat stress transcription factor B-4 13 111 - -
Phco6g00298 214 Coils Coil 143 170 - -
Phco6g00298 214 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 190 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00298 Phco-Chr6 2913255 2916844 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco6g00298 HSF_DNA-bind 1e-28 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00298 6 2913255 2916844 Phco6g00298 6 2913255 2916844 ECH
Phco2g01515 2 45080477 45082846 Phco6g00298 6 2913255 2916844 PCT