Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00287 ATGGGATTAGATGGGTTTTGGGAAAGGGTCAAGGTCAGCATAGGAAGACTCCCACTGCTTCCTTTCCCTTTCTCTTCCTTCTCTTCTTCTTTTCTCTCAATTTCATTTTCATTTTCATTTTCATTTGAGCTGTGTTTGCAAGTGTGTTGGATGGGAACTCCCGAATTTCCAGATCTGGGAAAGCACTGTTCGGTTTCTGATTGCAAGTTGATCGATTTCTTGCCCTTTACCTGCGATCGCTGCCACCAGGTGTATTGTTTGGAGCACAGAGGTTATATTAAACATCAGTGTCCAAAAGCTGACAAGAAAGATGTTACTGTAGTTATATGTCCACTTTGCGCTAAAGGAGTTCGCCTAGTTCCTGATCAAGATCCAAATATAACTTGGGAGAATCATGTCAATACTGACTGTGACCCATCGAACTATGAGAAAGTCACAAAGAAGAAAAAATGCCCTGTCCCAGGATGCAGAGAGATATTAGGATTCTCAAACACAATTAAGTGCAGGGACTGCACGGTAGACCATTGTTTAAAGCATCGGTTTGGACCTGATCATAAATGTCCTGGTCCCAGAAAAATGGAAACAAGTTTTTCATTTAGGAATCTTTTGAATGTGAATAAAAAACAGGAGTCCAAACCCCAGTCAAGTTCATCTGCATCATCAAGATGGTCTACAAACTTTCTTAATGCAGTTTCTAACATTCGAGCATCAGCAGAGGCTGGCGTGTCGAAGTTGAGTGAAGTTAACCAAGGCTGGTGGACAGCATCAGGTGGGGTGGGATCGAGCCATAGCAATGGTCAGGTGGAGCAATGCCCTCAGTGTGGTACCAAGTTTTCCTCTGTTACTGCTTTGGTGGACCATGTGCAAAAAGTTCATGAAAGGAGTGGCAAGCGATCTGGAGCAAAGGTTACAATTGATGTTTGCCCAAAGTGTAGTAGAGGATTCCGGGATCCTGTTTCCCTTGTGGAACATGTTGAGAGGGATCATGGTGGTAGATCATAA 1002 0.4331 MGLDGFWERVKVSIGRLPLLPFPFSSFSSSFLSISFSFSFSFELCLQVCWMGTPEFPDLGKHCSVSDCKLIDFLPFTCDRCHQVYCLEHRGYIKHQCPKADKKDVTVVICPLCAKGVRLVPDQDPNITWENHVNTDCDPSNYEKVTKKKKCPVPGCREILGFSNTIKCRDCTVDHCLKHRFGPDHKCPGPRKMETSFSFRNLLNVNKKQESKPQSSSSASSRWSTNFLNAVSNIRASAEAGVSKLSEVNQGWWTASGGVGSSHSNGQVEQCPQCGTKFSSVTALVDHVQKVHERSGKRSGAKVTIDVCPKCSRGFRDPVSLVEHVERDHGGRS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00287 333 Pfam Zinc finger, C2H2 type 307 329 IPR013087 -
Phco6g00287 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 269 297 IPR013087 -
Phco6g00287 333 Pfam C2H2-type zinc finger 270 292 - -
Phco6g00287 333 Gene3D - 51 108 IPR035896 -
Phco6g00287 333 SMART AN1_Zf_4 151 192 IPR000058 GO:0008270
Phco6g00287 333 SMART AN1_Zf_4 63 102 IPR000058 GO:0008270
Phco6g00287 333 ProSitePatterns Zinc finger C2H2 type domain signature. 308 329 IPR013087 -
Phco6g00287 333 ProSiteProfiles Zinc finger AN1-type profile. 57 105 IPR000058 GO:0008270
Phco6g00287 333 SUPERFAMILY AN1-like Zinc finger 52 100 IPR035896 -
Phco6g00287 333 Pfam AN1-like Zinc finger 151 190 IPR000058 GO:0008270
Phco6g00287 333 Pfam AN1-like Zinc finger 63 102 IPR000058 GO:0008270
Phco6g00287 333 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 55 297 - -
Phco6g00287 333 FunFam AN1-type zinc finger protein 2B isoform X1 53 114 - -
Phco6g00287 333 SMART c2h2final6 269 292 IPR013087 -
Phco6g00287 333 SMART c2h2final6 306 329 IPR013087 -
Phco6g00287 333 ProSitePatterns Zinc finger C2H2 type domain signature. 271 292 IPR013087 -
Phco6g00287 333 ProSiteProfiles Zinc finger AN1-type profile. 145 195 IPR000058 GO:0008270
Phco6g00287 333 Gene3D Classic Zinc Finger 249 332 - -
Phco6g00287 333 SUPERFAMILY AN1-like Zinc finger 143 196 IPR035896 -
Phco6g00287 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 306 333 IPR013087 -
Phco6g00287 333 Gene3D - 131 206 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00287 Phco-Chr6 2819264 2822426 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco6g00287 zf-AN1 5.1e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00287 6 2819264 2822426 Phco6g00287 6 2819264 2822426 ECH
Phco2g01549 2 45681443 45682915 Phco6g00287 6 2819264 2822426 PCT