Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00284 ATGGGGAACAGTTGCGTGACTCCGGGGAGGATCAGAAAGGTCAGGAAGCAGAAGAAGCGGGAGGATGGGGCGGGAAAGAAGCTGGTCGTGCTGAAGGACCCCACGGGCCGGGACATTGGGCTGCGCTATGATTTGGGCCGGGAGCTGGGCCGAGGGGAGTTCGGCGTCACGTACCTGTGCCGCGACAGGGAGACGAAGGAGGAGTGGGCGTGCAAATCGATATCCAAGAAGAAACTGCGAACCGCCATTGATATCGAGGATGTGCGCAGGGAGGTGGAGATCATGCGCCATTTGCCCAAACACCCCAACGTCGTCACGCTCAAGGACACCTTCGAAGACGACAATGCCGTTCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGCATTGTCGCGCGCGGCCATTACACCGAGCGCGCCGCCGCCACCGTCGTCAAAACCATCGTCGAAGTCGTCCAGATGTGCCACAAACATGGTGTGATGCATAGAGATCTCAAACCTGAGAACTTTTTGTTTGGAAACAAGAAGGAGTCAGCACCTCTGAAAGCAATTGACTTTGGATTGTCGGTTATCTTCAAACCAGGTGAAAAATTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAAGTATTAAAGCGTAATTATGGCCCTGAAGTGGATATTTGGAGTGCTGGAGTGATTCTTTACATCTTACTGTGTGGTGTGCCACCTTTTTGGGCAGAGAGTGAACAGGGAGTTGCTCAAGCAATTATTCGATCTGTTGTTGATTTTAGAAGGGAACCATGGCCCAAGGTTTCTGATAATGCAAAAGACCTTGTAAAGAAGATGCTTAATCCTGACCCAAAGCTCCGGCTTACCGCACAAGAAGTGTTAGATCATCCATGGCTACAGAATGCAAATAAAGCTCCTAATATTTCATTGGGAGAAACTGTTAGATCAAGGCTAATGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTTTGAGGGTGATTGCAGATTATTTGTCTTCAGAAGAAGCTGCTGGAATAAAAGAGGGATTCGAGCTGATGGATTCAGGCAATAAAGGCAAGATTAACATTGATGAGCTGCGAGTAGGGTTGCGGAAACTGGGTCACCAAATTCCTGATGGAGATGTACAAATTCTTATGGAAGCTGGTGATGTAGACAAAGATGGCTACCTAGATTATGGAGAGTTTGTTGCCATTTCTATTCATCTGAGAAAGATAGACCATGATGAGCACCTTCACAAAGCCTTCCAATTTTTTGATAAGAATCAAAGTGAATATATTGAAATTGAAGACTTACATAATGCCTTAGCTGACGAGGTTGAAACAAACAGCGACGAAGTCATCAATGCAATTATGCATGATGCTGACACAGATAAGGATGGAAGAATAAGTTATGAAGAATTTGCTGCAATGATGAGGGCTGGCACAGATTGGAGGAAAGCATCAAGGCAGTATTCAAGAGAGAAGTTTTCTAGTCTAAGTCAGAATTTGATCAAGGACGGGTCTTTGCAGTTAAACAATGGACTTTAG 1557 0.4631 MGNSCVTPGRIRKVRKQKKREDGAGKKLVVLKDPTGRDIGLRYDLGRELGRGEFGVTYLCRDRETKEEWACKSISKKKLRTAIDIEDVRREVEIMRHLPKHPNVVTLKDTFEDDNAVHLVMELCEGGELFDRIVARGHYTERAAATVVKTIVEVVQMCHKHGVMHRDLKPENFLFGNKKESAPLKAIDFGLSVIFKPGEKFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAESEQGVAQAIIRSVVDFRREPWPKVSDNAKDLVKKMLNPDPKLRLTAQEVLDHPWLQNANKAPNISLGETVRSRLMQFSVMNKLKKRALRVIADYLSSEEAAGIKEGFELMDSGNKGKINIDELRVGLRKLGHQIPDGDVQILMEAGDVDKDGYLDYGEFVAISIHLRKIDHDEHLHKAFQFFDKNQSEYIEIEDLHNALADEVETNSDEVINAIMHDADTDKDGRISYEEFAAMMRAGTDWRKASRQYSREKFSSLSQNLIKDGSLQLNNGL 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00284 518 ProSitePatterns EF-hand calcium-binding domain. 393 405 IPR018247 -
Phco6g00284 518 Pfam EF-hand domain pair 361 407 IPR002048 GO:0005509
Phco6g00284 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Phco6g00284 518 FunFam Calcium-dependent protein kinase 1 45 128 - -
Phco6g00284 518 CDD STKc_CAMK 42 300 - -
Phco6g00284 518 FunFam Calcium-dependent protein kinase 7 310 485 - -
Phco6g00284 518 ProSiteProfiles EF-hand calcium-binding domain profile. 344 379 IPR002048 GO:0005509
Phco6g00284 518 FunFam calcium-dependent protein kinase 13 129 309 - -
Phco6g00284 518 Gene3D - 310 484 - -
Phco6g00284 518 Pfam EF-hand domain pair 419 482 IPR002048 GO:0005509
Phco6g00284 518 ProSitePatterns EF-hand calcium-binding domain. 465 477 IPR018247 -
Phco6g00284 518 ProSiteProfiles Protein kinase domain profile. 43 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00284 518 SMART efh_1 456 484 IPR002048 GO:0005509
Phco6g00284 518 SMART efh_1 420 448 IPR002048 GO:0005509
Phco6g00284 518 SMART efh_1 348 376 IPR002048 GO:0005509
Phco6g00284 518 SMART efh_1 384 412 IPR002048 GO:0005509
Phco6g00284 518 Gene3D Phosphorylase Kinase; domain 1 45 128 - -
Phco6g00284 518 ProSiteProfiles EF-hand calcium-binding domain profile. 452 487 IPR002048 GO:0005509
Phco6g00284 518 SUPERFAMILY EF-hand 330 507 IPR011992 -
Phco6g00284 518 MobiDBLite consensus disorder prediction 1 22 - -
Phco6g00284 518 Gene3D Transferase(Phosphotransferase) domain 1 129 309 - -
Phco6g00284 518 Pfam Protein kinase domain 43 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00284 518 CDD EFh 420 482 IPR002048 GO:0005509
Phco6g00284 518 ProSiteProfiles EF-hand calcium-binding domain profile. 416 451 IPR002048 GO:0005509
Phco6g00284 518 ProSitePatterns Protein kinases ATP-binding region signature. 49 72 IPR017441 GO:0005524
Phco6g00284 518 PANTHER SERINE/THREONINE-PROTEIN KINASE 42 477 - -
Phco6g00284 518 SMART serkin_6 43 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00284 518 SUPERFAMILY Protein kinase-like (PK-like) 42 314 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00284 Phco-Chr6 2785444 2790230 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Phco6g00284 Pkinase 4.9e-78 CL0016