Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00277 ATGCTTGGACAAGGGAATTGTCTCCTTAGATCACCATTCTTGCTATGTATACTCATTGGCCTCTTGATGCATTCTGTTGTGGGAGCTGAGATTCCCTTGGGTTCCAAACTTTCTGTGGCTGACAATGATTATTGGGTTTCCTCCAATGGTGATTTTGCAATTGGATTCTTCAACATTTCAGACCAACCTAACCAGTTTAGTGTTGGAATTAGATTCAATTCCAAGTCTATACCGTATAGCCGACAAGCTATGGTTTGGGTTGCTGGGGGTGCTGTCACAGTAGGTAACGAGTCCTACTTTGAACTCACTCAAGAAGGGGAACTGGTCCTGTTTGATTCCTTGCATGAAGCTTCTGTTTGGACCACCAAAACGGGTAACCGATCTGTTGCTTCAGCATCTCTTCTTGACAATGGAAATCTTGTTCTAATGGACAAAGAGCAACACATGCTTTGGCAAAGTTTTGAGACTCCATCTGATGCACTTCTCCCCGGACAAAGTTTATTTCCCAATAAAATGCTTCGTGCTGCGCCAGCTAGTAAGAATAGCAAGTCCAGTTACTATAGTCTTCACATGAATGCTTCTGGGCATTTGGAGCTACATTGGGAAAGTGATGTTATCTACTGGACGAGTGAAAACCCTTCTTCTGCTTCGAATCTCAGTGCTTTCCTCACAACCAGTGGAGCTCTAGAACTTCGAGACCGGAGTTTGAATCCTATTTGGTCTGCATTTGGAGAGGATCACAATGATTCTGTGAACTACAGATATCTTCGGCTCGATGTGGATGGAAATCTTCGGTTATATTCGTGGGTTGAAAGTTTGGGATTGTGGAGATCGGTCTGGCAAGCTGTTGAGAATCAGTGCAAGGTCTTTGCAACTTGTGGTCAACTTGGTGTCTGTGTCTTCAATGCCTCAGGTTCTGCTGAATGCAAATGCCCGTTTCAGGTAACTGGGGGTAACAAATGTTCGGTTCCATTTGAACGAGAGTGTGCATCTGGCACCAATATGATAGCATACAAGAACACATATTTATATGCATTCTACCCTCCTGATAATTCTGTCATCACAAGTAATTTGCAGCACTGTGAACAGCTGTGTCTGAATGATTCGCAGTGTACAGCTGCAACTTTTTCCAATGACGGAACTCCACAATGCTCAATAAAGACAACTGGGTATGTCACTGGTTATTCAGGTCCATCTGTAAGCTCAATATCATTTGTTAAGAGATGTTCAGGTCCATTTGCTGTAAATCCAAGTCTCACAAAATCTCCTCCTTCTGAACCACCGCCCCCTCTCTGTGTTCCTTGCCTAATGGGGGCTGCCACAGGCACATTTTTCATCATTGTTATTCTCCAGTTGGGAATTATGTTCTTCATCTACAAAAGAAAAAACTCTACCAGGCCAAAGGCCACTTTAGGTTTCACAGGCACAAACTCAAAGGGTTTAATTGTGTTGTCCTTCTCAGAAATCAAGAGCCTGACAGGGGATTTCAAGAATCAAATTGGGCCAAAGGTGTTCAAGGGTTTGCTACCAAACAATCACCCCATTGCACTTAAAGACCTGAACGCAACCTTGGAGGAAAGAAAGTTCCGAAGTGCTGTTATGAAGATGGGTAGCATTCACCACAAGAACCTTGTAAAACTGGAGGGTTATTGTTGTGAGTTTGATCACAGGTTTTTGGTGTATGAATATTGCAAAAGGGGTTCATTGGACAAGTACATAGATGATCCTGCTCTTTGCAAGATGCTAACATGGAGAAAGAGAGTTGAAATATGCTCAAGTGTGGCAAAAGCCATATGTTATTTGCACTCAGGGTGCAGGGAGTTCATAAGCCATGGAAATTTGAAATGTGAAAACGTAATGTTGGATAAAAACTTGGTGGCCAAGGTGAGTGAATTTGGGTTTGCTATAGCAGATGGAAGGGCAACATATTGTGGCTTTTCAGCTGAGAAGGATGTAGAGGATTTTGGCAAGGTAGTATTAACCTTGTTAACCGGATGTCGTGATCATGAACACATTGAACTTTGTGGTTGGGCGTATAAAGAGTGGATGGAAGAGAGGGTTGTGAATGTGGTTGATAGAAGAATTGAAGGGGGTTACAATTCAGAGGAACTGGAGCGTGTGTTGAGAATTGCATTTTGGTGCCTTCAAATGGATGAACGCAGGAGACCTTCGATGGGGGAGGTAGTAAGAGTAATTGATGGTACATTGAGTGTTGATCCTCCACCACCTCCTTTTGCCTTTCAGAGGCCCTTGCTGGTACATGATTCAGAAGAAAATGTTTCAGAGTTGGAAGTGTAG 2298 0.4312 MLGQGNCLLRSPFLLCILIGLLMHSVVGAEIPLGSKLSVADNDYWVSSNGDFAIGFFNISDQPNQFSVGIRFNSKSIPYSRQAMVWVAGGAVTVGNESYFELTQEGELVLFDSLHEASVWTTKTGNRSVASASLLDNGNLVLMDKEQHMLWQSFETPSDALLPGQSLFPNKMLRAAPASKNSKSSYYSLHMNASGHLELHWESDVIYWTSENPSSASNLSAFLTTSGALELRDRSLNPIWSAFGEDHNDSVNYRYLRLDVDGNLRLYSWVESLGLWRSVWQAVENQCKVFATCGQLGVCVFNASGSAECKCPFQVTGGNKCSVPFERECASGTNMIAYKNTYLYAFYPPDNSVITSNLQHCEQLCLNDSQCTAATFSNDGTPQCSIKTTGYVTGYSGPSVSSISFVKRCSGPFAVNPSLTKSPPSEPPPPLCVPCLMGAATGTFFIIVILQLGIMFFIYKRKNSTRPKATLGFTGTNSKGLIVLSFSEIKSLTGDFKNQIGPKVFKGLLPNNHPIALKDLNATLEERKFRSAVMKMGSIHHKNLVKLEGYCCEFDHRFLVYEYCKRGSLDKYIDDPALCKMLTWRKRVEICSSVAKAICYLHSGCREFISHGNLKCENVMLDKNLVAKVSEFGFAIADGRATYCGFSAEKDVEDFGKVVLTLLTGCRDHEHIELCGWAYKEWMEERVVNVVDRRIEGGYNSEELERVLRIAFWCLQMDERRRPSMGEVVRVIDGTLSVDPPPPPFAFQRPLLVHDSEENVSELEV 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00277 765 SUPERFAMILY alpha-D-mannose-specific plant lectins 182 278 IPR036426 -
Phco6g00277 765 Pfam S-locus glycoprotein domain 248 311 IPR000858 GO:0048544
Phco6g00277 765 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 643 740 - -
Phco6g00277 765 Pfam Protein tyrosine and serine/threonine kinase 506 638 IPR001245 GO:0004672|GO:0006468
Phco6g00277 765 Gene3D Phosphorylase Kinase; domain 1 459 563 - -
Phco6g00277 765 Gene3D - 28 156 IPR036426 -
Phco6g00277 765 PANTHER OS07G0415500 PROTEIN 12 746 - -
Phco6g00277 765 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 156 - -
Phco6g00277 765 ProSiteProfiles Bulb-type lectin domain profile. 158 279 IPR001480 -
Phco6g00277 765 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 211 IPR036426 -
Phco6g00277 765 SMART ntp_6 330 408 IPR003609 -
Phco6g00277 765 ProSiteProfiles EGF-like domain profile. 283 322 IPR000742 -
Phco6g00277 765 ProSiteProfiles Bulb-type lectin domain profile. 30 155 IPR001480 -
Phco6g00277 765 ProSiteProfiles Protein kinase domain profile. 468 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00277 765 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 460 563 - -
Phco6g00277 765 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 157 278 - -
Phco6g00277 765 PIRSF SRK 641 764 IPR024171 GO:0004674
Phco6g00277 765 PIRSF SRK 5 642 IPR024171 GO:0004674
Phco6g00277 765 SMART blect_4 36 157 IPR001480 -
Phco6g00277 765 SUPERFAMILY Protein kinase-like (PK-like) 483 730 IPR011009 -
Phco6g00277 765 Gene3D - 157 273 IPR036426 -
Phco6g00277 765 CDD B_lectin 46 157 IPR001480 -
Phco6g00277 765 Gene3D Transferase(Phosphotransferase) domain 1 642 740 - -
Phco6g00277 765 Gene3D Transferase(Phosphotransferase) domain 1 564 641 - -
Phco6g00277 765 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 564 642 - -
Phco6g00277 765 Pfam D-mannose binding lectin 84 171 IPR001480 -
Phco6g00277 765 ProSiteProfiles PAN/Apple domain profile. 329 409 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00277 Phco-Chr6 2733437 2735734 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Phco6g00277 PK_Tyr_Ser-Thr 3e-20 CL0016