Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00276 ATGATGAACCACTTGACCATTGAGACTGAGGATTCTTTTGCAAGCTTGCTTGAGCTTGCTGCTAACAACGATGTTGAAGGTTTTAAACGAATGATTGAGAGGGATCCTTCCTGTGTAGATGAGGTAGGACTATGGTACAGTCGCCAGAAGGGATCTAGGCGGATGGTCAATGAGCTCAGAACCCCGTTGATGGTTGCTGCTTCTTACGGAAGCATTGATATTTTGGATCTGATTCTCTCACTTTCTGGTTATGATATTAATAAACCTTGTGGCCTTGACAAGAGTACTGCTCTTCATTGTGCGGCTTCGGGTGGGGCTGAAAATGCTGTTGATGTTGTTATATTGCTCCTAGCTGCAGGAGCCGATCCAAACTCTGTGGATGGAAATGGTCATCGTCCAGTTGATGTCATTGTTTTTCCTCCCAAGCATGAATCTGTTAGAAACAGTCTTGAAGCACTTCTTCAAACTGATGACTCCATTGGAGTGTGTAATCTCAGGGTGATCACGGCCCAATCAAATGCATATTCTCCCCCTTTGTCAACTTCACCCGAGAACGGGTCTCCTTCTGCACCAGATTTCCAACTGAAGTCAAAGTTAAACGATGGCTCTGTTTCTTCTGCATCAGAGAAGAAAGAATATCCTGTTGATCCATCCCTTCCTGACATCAAGAATAGCATATATTCAACCGATGAATTTCGGATGTATTCTTTCAAAGTTCGACCTTGTTCACGTGCTTATTCACATGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAGAATGCTCGCAGAAGGGACCCAAGAAAGTACCACTACAGCTGTGTCCCTTGTCCTGATTTTCGGAAGGGTGCTTGCCGACGTGGAGATATGTGTGAATATGCCCATGGAGTTTTCGAGTGTTGGCTGCATCCAGCACAGTATCGTACTCGTCTTTGCAAAGATGGGACAAGTTGCTCCAGAAGAGTTTGCTTTTTTGCTCACACTGCTGAGGAGCTTCGGCCATTATATGTTTCAACTGGTTCTGCTGTACCATCTCCTCGTTCAAGTTCATCTGCTATGGAATTTGCTGCAGCTATGAATATGTTACCCGGCTCTCCTTCCTCAATGTCTGTCATGTCTCCTTCACCGTTCACTCCACCCATGTCACCTTCTGCCAATGGCATGTCACACTCATCCGTTGGCTGGCCCCAACCAAATGTCCCAGCCTTGCATCTTCCAGGGAGCAATCTTCATTCCAGTCGTTTAAGATCTTCATTCAATGCCAGAGATATTCCTATGGATGAGTTTGACATGTTGCCTGAGTACGATGCTCAGCAACAGCAACAGCTTCTTAACGAGTTCTCTTGCCTCTCTAAACAGCCTAATGCTATGAACCGCTCCGGTCGCATTAAGACCCTGACCCCTTCAAATCTTGATGATCTATTTTCTTCTGAGAGTTCATCACCTCGGTTTGCTGATCCAGCATTGGCTTCGGCTGTTTTTTCTCCGACACATAAATCGGCTATTCTTAATCAATTTCAGCAGCAGCAAAGCCTGCTGTCGCCTGTGAACACAAACTTTTCTTCTAAAAATGTTGAGAATCCTTTATTGCAGGCTGCCTCTTTTGGGGTTCAAGCATCAGGAAGGATGTCTCCTCGGAATGTGGAACCTATCTCTCCAATGAGCTCTCGGATTTCTGTGCTAGCTCAACGTGAGAAGCAGCAACAATTCCGAAGCCTTAGCTCCAGGGAACTTGGCTCCAACTCTGCTACTGTTGCTGCAGCTGCTGCTGGGTCCCCAGTCAATTCTTGGTCAAAATGGGGACCCTCCAATGGTACATTGGATTGGGCTGTCAATGCTGATGAGTTAAGGAAACATCGTAGATCATCTTCGTTTGAGCATGGGAATAATAGTGAGGAGCCTGATTTCTCATGGGTCCAGTCACTTGTAAAAGAATCTCCAACTGAGATTAAGGAGAATTCAACTACAACTGTCTCAAGTGGTGCAGCAGCTGGATCCTCCAGTGAGGTATCAAATATGAGCACACAAATGGACTCTGTTGATCATGCGGTGTTAGGAGCATGGCTTGAACAAATGCAGCTCGATCTTGTGGCTCAGCAAAATTAA 2106 0.4573 MMNHLTIETEDSFASLLELAANNDVEGFKRMIERDPSCVDEVGLWYSRQKGSRRMVNELRTPLMVAASYGSIDILDLILSLSGYDINKPCGLDKSTALHCAASGGAENAVDVVILLLAAGADPNSVDGNGHRPVDVIVFPPKHESVRNSLEALLQTDDSIGVCNLRVITAQSNAYSPPLSTSPENGSPSAPDFQLKSKLNDGSVSSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSSSAMEFAAAMNMLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVGWPQPNVPALHLPGSNLHSSRLRSSFNARDIPMDEFDMLPEYDAQQQQQLLNEFSCLSKQPNAMNRSGRIKTLTPSNLDDLFSSESSSPRFADPALASAVFSPTHKSAILNQFQQQQSLLSPVNTNFSSKNVENPLLQAASFGVQASGRMSPRNVEPISPMSSRISVLAQREKQQQFRSLSSRELGSNSATVAAAAAGSPVNSWSKWGPSNGTLDWAVNADELRKHRRSSSFEHGNNSEEPDFSWVQSLVKESPTEIKENSTTTVSSGAAAGSSSEVSNMSTQMDSVDHAVLGAWLEQMQLDLVAQQN 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00276 701 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
Phco6g00276 701 MobiDBLite consensus disorder prediction 647 675 - -
Phco6g00276 701 Pfam Ankyrin repeats (3 copies) 50 127 IPR002110 GO:0005515
Phco6g00276 701 PANTHER UNKEMPT FAMILY MEMBER 18 646 IPR045234 -
Phco6g00276 701 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Phco6g00276 701 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Phco6g00276 701 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Phco6g00276 701 MobiDBLite consensus disorder prediction 176 216 - -
Phco6g00276 701 Gene3D - 9 159 IPR036770 -
Phco6g00276 701 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
Phco6g00276 701 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Phco6g00276 701 MobiDBLite consensus disorder prediction 176 207 - -
Phco6g00276 701 Gene3D - 273 334 - -
Phco6g00276 701 SMART ANK_2a 11 40 IPR002110 GO:0005515
Phco6g00276 701 SMART ANK_2a 93 125 IPR002110 GO:0005515
Phco6g00276 701 SMART ANK_2a 58 88 IPR002110 GO:0005515
Phco6g00276 701 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Phco6g00276 701 SUPERFAMILY Ankyrin repeat 16 139 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00276 Phco-Chr6 2701485 2703590 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco6g00276 Ank_2 5.5e-08 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00276 6 2701485 2703590 Phco6g00276 6 2701485 2703590 ECH