Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00272 ATGGACGGTGGCGAAGACCCTTCAACATTGGCATGGATTTGGGTCATTGAAGCTCTATCAGCCTGTAAAGAAATCTCGACTCCCATTTTGCAGGGTTTGATTGATTCAGCACCTGTCGGGAAGGATAAATTTGGTGAAATTACAAAGGAGATAGTTTCTTTGAGGTGTTTGGAGGAACTGCCCACTAGTGTGGTTGAACGTGTAGCTTCTTCTACATCGGATTCAAGAGCTGGATTTGACTTTTCGCGGGGTTGTCAAGATGTCCTCCAGGAAATATTGAATGAGACCCCATTATCAAATCTGAAAATGACTGGAGCAGAGCTTTTGAAATCAGATGTTTACCCGTTTATAAATCACAAAAGAGCTGGCACTTTGAAATGTCACTTAGAGCAGCTGAGACAAACAATCTTGGAAGGTACTCATCCTCATACTGATTACTTGAAAGAAAGGAGTGGATTATTTCCTCAGAATAATGGTTATTCAGTGATTGTAAATGATGTCAAACGTGATGATCACTCAGCTAAGGAAGTTGGGAACTCCACCAATACTGAAAATATGGTAGGAAAAGATATCTCAGTGTCCTTAACTTTAGAGAATGGGAATGAAACTTCCAAAGAACACTTGCTTGATAATAATTCTTCACCTTCCACGAGGAGTAGGGTTTACTCAGCTGATGATTATCTTACAGAGCACTTTGATGGAAAGCAAGTCTGTATAAATGAATGTGATGATTTCTGTAGAACTTCAAAGAGGGTTAAATTTTCTGCATCTACAAGTTTTGAGTCTAAGAAAGAGAAGCCAGTTTCTCAACTCAGACAGGAAGTGTCAGAACATTTAACTGAAAGAGTTCTTCTAGTTTCTGAACGAGGAGATCATCATGTGGAAAATAATGACAAAGAAACTCTGGTTGGTGGGTCCTCAGAGGATATTCCCAATAAATGCACTGTTTCAAAAGTGTGCCAACCTAGCAGCCATATTGAAGTTCCCCGTGATGAATCAAATACTCCTTTTAATGATGCTTTGATGCTTCAACCTACATTTGGTGCTGAAAATTCTCAGCAACTGCAGGTTGAGTCAATTCCACATGTTGCACTCGCAGATGGAATCCAGCTTGAGATTTCCGGAGTTAAACCTAGGTCTAAACATGAAAAAGATTTACAACTCAAAGATCCAAATGACCCACAGCTGCAAATTGCTGGTGTTAAAGCTCCAGAGCATACTGGGAATGGTTTTGGGATAGAGAAATCAGGTGATATTGTGTATCAAGGTGAAAAAATTAGCCTTGAAATGGAAAAGCAGGCAGAACAAAATCTTTGTTTGAAGTGTAATGAAAGTGATCAATTACCAATTTCTGATGTAAATGTCATCCAACCAGTGGTTACTGAATGTTGTCTTGCTTTGACAACTACCATTCCAACAAATGATGCTAAGGCAGAAAAAAATCAGCAAATAATTAATCTAGAGCAACGCAAACAGACGGAACCAGATATCGCAGCTTTAAATCTCCCCCAGGAGCCAGTTGTTTGTGATAAAACTATAGTTGGTGCAGTTATTGGTTGTGGAGCAGAGCTATCAAGTGATAGTGATGGATATCACAACGAAAAAAAATGTCTTGAAGCAAAAAGGCATGAATTCCTGTGCTCCCAATTCACAGTTGATCAAGATTTCTCAGCAATGAATGAACTAAATAAACAAAATCTTTGCATGAAGTGTAATCAAGGTGGCCAATTACTGGCTTGTAAAACAACTACTTGTCCATTGATGGTGCATGAAGACTGTCTTGGTGCATCTGCACAATTGGATGCAAAGGGCAATTTTTTTTGCCCATTTTGTGCATATTCTCGCACTATTTCAGAATATGTTGAAGCTAAGGAAAAAGCTTCCTTGGCAAGGAAGGAATTAACCATCTTTATTAGTAAAGGTAAAATGAGTCAAGCTGCTGATAGTCTTCTTTATGAATTTCGTACGCAAGAACATTGTTTTTCAAGAAAGAGTAGTGAGTGTGAACATATTCATGTAAAAAACAACAAAGATGATCAGTTGACAAGGTGTGAAGACAATAGAGAATATCATGTTGGTGAGCATGCAAATGAAGCCAATAATCTTCAGTTTGGAAGAAGTCAGCAACAAAATTCATCATGCAGAGAAAAGGAAAATCTAAGCAATGGATCAGTTGAAATTTTAAGAGAAGAGAAAATTGGTGAAATGCGAAATGCAAAGAACATAACTGGTGTAAGAGTTGAAGAAAATGAAGTACCTACTGACCATGTAGATGGACATGATGTTGACACATGTACTAGTGAAAAAACAAATAATGCCCTTGTTAATAAAAGCAATGCTGGATATGAAACTCCACAAGAAATGACAAAACAGCAAGATATTGATGGAGCAATAGAGCCAGTTTGTGCACATAATACTGGAAAAGAGGAAATGTCTGAAATTGAATGTGAAAAACATAGTACTTCTAGTTCTAGATACTCCATGAGATACCGTAAACATGAAATGCAACGCAAACCCCAGGCACGCCCAGTATTTCTGGGTAATCAATTAAGACGGAAAAAAATTCCGTGGACAGCTGAGGAGGAAGAGATGATAAGGGAGGGAGTACAGAAGTTTGGTTTCGATGACCCAAGGAAGTGGAAAAACATTTTGGCATTTGGTTCTCATGTGTTTGAGAAAGTTGGTAAGCGTCGTACACCACAAGACCTGAAGGATAAATGGAAGAACATGTGCAAAGCTCACTCAAAATCAAAATGA 2757 0.3841 MDGGEDPSTLAWIWVIEALSACKEISTPILQGLIDSAPVGKDKFGEITKEIVSLRCLEELPTSVVERVASSTSDSRAGFDFSRGCQDVLQEILNETPLSNLKMTGAELLKSDVYPFINHKRAGTLKCHLEQLRQTILEGTHPHTDYLKERSGLFPQNNGYSVIVNDVKRDDHSAKEVGNSTNTENMVGKDISVSLTLENGNETSKEHLLDNNSSPSTRSRVYSADDYLTEHFDGKQVCINECDDFCRTSKRVKFSASTSFESKKEKPVSQLRQEVSEHLTERVLLVSERGDHHVENNDKETLVGGSSEDIPNKCTVSKVCQPSSHIEVPRDESNTPFNDALMLQPTFGAENSQQLQVESIPHVALADGIQLEISGVKPRSKHEKDLQLKDPNDPQLQIAGVKAPEHTGNGFGIEKSGDIVYQGEKISLEMEKQAEQNLCLKCNESDQLPISDVNVIQPVVTECCLALTTTIPTNDAKAEKNQQIINLEQRKQTEPDIAALNLPQEPVVCDKTIVGAVIGCGAELSSDSDGYHNEKKCLEAKRHEFLCSQFTVDQDFSAMNELNKQNLCMKCNQGGQLLACKTTTCPLMVHEDCLGASAQLDAKGNFFCPFCAYSRTISEYVEAKEKASLARKELTIFISKGKMSQAADSLLYEFRTQEHCFSRKSSECEHIHVKNNKDDQLTRCEDNREYHVGEHANEANNLQFGRSQQQNSSCREKENLSNGSVEILREEKIGEMRNAKNITGVRVEENEVPTDHVDGHDVDTCTSEKTNNALVNKSNAGYETPQEMTKQQDIDGAIEPVCAHNTGKEEMSEIECEKHSTSSSRYSMRYRKHEMQRKPQARPVFLGNQLRRKKIPWTAEEEEMIREGVQKFGFDDPRKWKNILAFGSHVFEKVGKRRTPQDLKDKWKNMCKAHSKSK 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00272 918 SUPERFAMILY Homeodomain-like 851 912 IPR009057 -
Phco6g00272 918 ProSiteProfiles Myb-like domain profile. 849 911 IPR001005 -
Phco6g00272 918 Pfam Myb-like DNA-binding domain 857 913 - -
Phco6g00272 918 SUPERFAMILY FYVE/PHD zinc finger 561 615 IPR011011 -
Phco6g00272 918 SMART PHD_3 567 612 IPR001965 -
Phco6g00272 918 MobiDBLite consensus disorder prediction 699 721 - -
Phco6g00272 918 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 560 622 IPR013083 -
Phco6g00272 918 CDD SANT_TRF 855 912 - -
Phco6g00272 918 MobiDBLite consensus disorder prediction 700 720 - -
Phco6g00272 918 ProSitePatterns Zinc finger PHD-type signature. 568 611 IPR019786 -
Phco6g00272 918 SMART sant 853 913 IPR001005 -
Phco6g00272 918 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 851 915 IPR017930 -
Phco6g00272 918 ProSiteProfiles Zinc finger PHD-type profile. 565 614 IPR019787 -
Phco6g00272 918 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 510 914 - -
Phco6g00272 918 Gene3D - 848 914 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco6g00272 Myb_DNA-bind_6 1.9e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00272 6 2632492 2638181 Phco6g00272 6 2632492 2638181 ECH