Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00266 ATGGGAGACCCTTACTCCAATTTCTTCTCACCACCTTTCTTCCACTACCCCTCTCCAAACCCTTCCCCCCACCACCATCCATACGCTCACAACTTAATCAACCAAACCACCACCACCACCAACATCAGCCACAGCACCTTTTTCCACTTCCAACACCACCACCACTTTCAAACCACTACCACTTCTTATTCTTCTTCACCCCCTTCCCCTCCCTTGAGAGAGGCCCTTCCTCTTCTCAGTCTCAGCCCAAAAAATGATGAGGAACAAGAGGAGTACCGGGATCAGGATCAGGTTTGCACTGCCATGGATGTGGAAGAGAACTTTAACAGGACCCTCCATAACCCCAAAGAAGAGGAGCAAGAAGAGGGTGGTGGTGACGACAGTGTCACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATAGCTTCTGTGCTGTCTTCAGCTTGTGCCACAGACAAAGAGCAACAGCAAGGGGGAGGTGGAGGAGATTGTAATAATAATGGGATTGAGGATTCTTCTTCAGGGTTCTTGTCGAACAGGCTCAACAAGGGACAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCTCTTGTCCAGTTTGTTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCACGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAGCCAACAGGTATGCTTAGGCTTCCATGCTATTGTTGTTCCCCAGGATGCAGGAACAACATTGATCACCCAAGAGCAAAGCCCCTTAAAGATTTCAGAACTCTTCAAACACACTACAAGAGGAAGCATGGAATTAAGCCCTTCATGTGTAGAAAATGTGGTAAGACTTTTGCAGTGAGAGGTGATTGGAGGACCCATGAAAAGAACTGTGGGAAGCTTTGGCATTGCATCTGTGGCTCTGATTTCAAGCACAAGAGGTCTCTTAAAGATCACATCAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGGATCGATGGCTTTGAAGAAGAAGAAGAGCCTGCATCTGAAGTAGAACAAGACAATGACTAA 1092 0.4771 MGDPYSNFFSPPFFHYPSPNPSPHHHPYAHNLINQTTTTTNISHSTFFHFQHHHHFQTTTTSYSSSPPSPPLREALPLLSLSPKNDEEQEEYRDQDQVCTAMDVEENFNRTLHNPKEEEQEEGGGDDSVTVALHIGLPSPSAAEIASVLSSACATDKEQQQGGGGGDCNNNGIEDSSSGFLSNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKTFAVRGDWRTHEKNCGKLWHCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDND 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00266 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 289 316 IPR013087 -
Phco6g00266 363 ProSitePatterns Zinc finger C2H2 type domain signature. 207 227 IPR013087 -
Phco6g00266 363 Gene3D Classic Zinc Finger 267 342 - -
Phco6g00266 363 Gene3D Classic Zinc Finger 204 227 - -
Phco6g00266 363 SUPERFAMILY beta-beta-alpha zinc fingers 271 309 IPR036236 -
Phco6g00266 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 205 232 IPR013087 -
Phco6g00266 363 SMART c2h2final6 289 309 IPR013087 -
Phco6g00266 363 SMART c2h2final6 205 227 IPR013087 -
Phco6g00266 363 MobiDBLite consensus disorder prediction 154 175 - -
Phco6g00266 363 PANTHER ZINC FINGER PROTEIN WIP2 36 361 IPR043584 GO:0003700|GO:0010468
Phco6g00266 363 FunFam Zinc finger protein WIP2 258 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00266 Phco-Chr6 2565774 2567952 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco6g00266 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00266 6 2565774 2567952 Phco6g00266 6 2565774 2567952 ECH
Phco6g00266 6 2565774 2567952 Phco10g01688 10 39410332 39417400 ECH
Phco2g01569 2 45959402 45961726 Phco6g00266 6 2565774 2567952 PCT