Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00261 ATGGAGAGTAGTGGCAAGGTGGAAGACTATGAAGTGATTCGGCAAATTGGAAGAGGAGCACTTGGAGCAACTTTTCTTGTTCTACACAAGATTGAGAAAAAGAGGTATGTGCTGAAGAAAATTCGCTTGTCCAAACAAGCTGACAAATCCAAAGTGACAGCACAACAAGAGATGGACCTGATAGCTAAACTAAATTACCCTTATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGATTACACATGCATTATAACCGGCTATTGCGAAGGGGGTGACATGGCTGCGAACATAAAGAAAGTTCGGGGATCTTATTTTTCAGAGGAGAAAGTCTGCAAATGGTTGACTCAGTTGTTACTAGCTGTGGACTACCTTCACTCCAATCGCGTACTCCACAGAGATGTTAAGTGTTCCAACATATTCCTTACCAAAGAAAATAACATTCGATTAGGTGAATTTGGTCTTGCGAAGCTTCTCAATACTGAAGACCTCACTTCTCCGGCTTTTGGAACTCTAAACTACATGTGTCCTGAGGCATTTGCTGGTATGCCTTACGGTTATAAATCTGATATGTGGTCACTTGGTTGCTGCATGTTTGAAATTGTTGCACATCAACTAGCATTTCGTGCTCCAGACAGGGCTGGACTTATCAATAAAATAAATAGATGCTCCATTTCTCCACTACCAATTGTTTACTCGTCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCAGAACACAGACCAACAGCATCTGAATTATTAAGGCATCCTCATTTACAACCTTATGTTCTACGCTGTCATAATGCTTCATCTATTTATCTACCAGTACATCTTATAAATAGTAACTCCCCAAAGGATAAAACTAAAAACAAATCTAGTGGTAGCAAAGACCATTGGGACAAGGAAGCAAGATTGGCTGGATTAGTAAATCGTTTGGACCGAATTTATTCATTTGAGGGAAATGTAGATGTACAGACACGGAACCAGCATAATGAGGGCAAGGTAGCAGTGCCAACCAAAGACAACCTTGAGACCAAAATGGTTGATTCTACCAGCTACACTCTGGAATTTTCTACAAGTATTAGTGGCTCGAAAGATGGCTCTACAACATCTGAATCAACCGTTTGCAGTGTGAGCAAGGAAGGAGACTTTAAAAATAGAATTGCAAGGGACATAGCTGACAGTGAGATCACCTCAAAAAGTACAATAGATTGTGTGCATGAAGAACAAGGACTTACTACCCTTAAGTCATACGCGATTGACATAAATACAGTAATTAAAAATGTTGAAGATATTTTTTCCAATGAAGATCTCAATACAGATGAAGCACTGAGTGAAGGTGCCAAACCTGGGGATTCCAGTAAATCCACAATGTCCAGTGAAGGCAGCAATGGTAATGATAAAGATGAGTCCAGTGATGAGATCATGTCAAAGAGTACCCTTGTTTCTGTGCATGAAGAGCAAGGATTTACGACGGATCATTTTCAGAAGTCAGATGTAATTGACCCAAGCGCAGTATCTACAGAAGTTGAAGATAATTTTTCCAATGAAGGTTTTGATAAAATGGAAGCAGAGAGGGAGAATGCCAAACCTGAGGACTCCAGAAAATCAATAGTGTTCATTGAAAACAGTGAAGGTAATGATAATGATGGGTCCATTGATGAGATCACTTCAAAGAGTATTCTAGAATCTGTGCATGGTGAACAAGAATTTACTGCTGAACATTTTCCAGAGTCAGATGTGATTGACACGAGTGCAGTGGCTACAACAGTTGAAGATAATTTTTACAATGAAGCATTTGACCAAACTGAAACAGAGAGGAAAAATGGCAGACATGAGGACTCCAGAATATCAGTAGTGTCCAATGAAAACAGTGATGCTGATGGTAATGATAGTTCCATTAATGAGATCAGATTGAAGAGTACAATCGGTTATGTGCAAGAAGAGCAATGGTTTATAGCTGAACATGTTCAAAAGTTAGATGTTGTTGACGTAGAAGCTGCGGCTTCCAAAGATATGGACAAAATTTCTAGTGAAGGTTTTGATAAAGATGAAGCACAGAGGGAAGATACCAAACTTGAGTGCCCCAGTAAATCAATAATTTCCTATGATAACAGCAATGGTAATGATGAAGATGGATCCGGTGGTGAGATCACATCAAAGAGTATGCTAGAATCTGTAGGTGAAGAACAAGGACTCACTGCTGAGCATTTTCAGATGTCTGATGCAAATGACATAAATGCAGTGACTACAGAAGTTGAAGATAAACTTTCCAATGAAGGTTTTGATAAAGCTGAAACACTGGCCAAAGAAGCTAAACCTGAGGATTCCATTACATCTTTGTCCAGTGAAGAGGGTGGTGGCTGCGGTGGTGATAAAGATGGATCCATTGACGAGGAAAGGTCATCATCCCCAATGGCACCTGTTAAGGTTGAACATGACACTGAAACTGGAAGCAGCTTGAAGGAAAATGAAAACCCTGAAGCATTTAAAGAAGGCTCACGCATGGACATCTTGACTCCTGATAGTAAGGATACGCATCCAGGTAAGGATGAAAACAGAGAAGAGACACATACGATCAGTTGCTCAACGTGTAAAGAAGACAGCAATGCTGTTGTGGCCCATAAGCCAGCAAATGGCATTTCAGTAATGAAGCGTATTTCAAGAGGCAGTACTACTTCCTGCCTGCAAAGAGCTGATGCTTTGGAATCTCTACTTGAGTTATGTGCACAGCTACTTCAGCAAGGAAACCTTGAAGAGCTTGCTGCTGTGCTAAGACCATTTGGAGAAGATGCCGTATCTGTGTCATCCAGAGAAACAGCAATATTGCTTACCAAAAGCCTCATGGCCTCACAAAAACTTAATCCTGAAACGTAG 2892 0.4056 MESSGKVEDYEVIRQIGRGALGATFLVLHKIEKKRYVLKKIRLSKQADKSKVTAQQEMDLIAKLNYPYIVEYKDAWVEKEDYTCIITGYCEGGDMAANIKKVRGSYFSEEKVCKWLTQLLLAVDYLHSNRVLHRDVKCSNIFLTKENNIRLGEFGLAKLLNTEDLTSPAFGTLNYMCPEAFAGMPYGYKSDMWSLGCCMFEIVAHQLAFRAPDRAGLINKINRCSISPLPIVYSSTLKQLIKSMLRKNPEHRPTASELLRHPHLQPYVLRCHNASSIYLPVHLINSNSPKDKTKNKSSGSKDHWDKEARLAGLVNRLDRIYSFEGNVDVQTRNQHNEGKVAVPTKDNLETKMVDSTSYTLEFSTSISGSKDGSTTSESTVCSVSKEGDFKNRIARDIADSEITSKSTIDCVHEEQGLTTLKSYAIDINTVIKNVEDIFSNEDLNTDEALSEGAKPGDSSKSTMSSEGSNGNDKDESSDEIMSKSTLVSVHEEQGFTTDHFQKSDVIDPSAVSTEVEDNFSNEGFDKMEAERENAKPEDSRKSIVFIENSEGNDNDGSIDEITSKSILESVHGEQEFTAEHFPESDVIDTSAVATTVEDNFYNEAFDQTETERKNGRHEDSRISVVSNENSDADGNDSSINEIRLKSTIGYVQEEQWFIAEHVQKLDVVDVEAAASKDMDKISSEGFDKDEAQREDTKLECPSKSIISYDNSNGNDEDGSGGEITSKSMLESVGEEQGLTAEHFQMSDANDINAVTTEVEDKLSNEGFDKAETLAKEAKPEDSITSLSSEEGGGCGGDKDGSIDEERSSSPMAPVKVEHDTETGSSLKENENPEAFKEGSRMDILTPDSKDTHPGKDENREETHTISCSTCKEDSNAVVAHKPANGISVMKRISRGSTTSCLQRADALESLLELCAQLLQQGNLEELAAVLRPFGEDAVSVSSRETAILLTKSLMASQKLNPET 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00261 963 Pfam Protein kinase domain 10 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00261 963 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 8 911 - -
Phco6g00261 963 MobiDBLite consensus disorder prediction 703 732 - -
Phco6g00261 963 CDD STKc_Nek 9 264 - -
Phco6g00261 963 ProSiteProfiles Protein kinase domain profile. 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00261 963 MobiDBLite consensus disorder prediction 545 559 - -
Phco6g00261 963 MobiDBLite consensus disorder prediction 676 862 - -
Phco6g00261 963 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Phco6g00261 963 MobiDBLite consensus disorder prediction 446 491 - -
Phco6g00261 963 MobiDBLite consensus disorder prediction 820 862 - -
Phco6g00261 963 MobiDBLite consensus disorder prediction 498 517 - -
Phco6g00261 963 MobiDBLite consensus disorder prediction 455 470 - -
Phco6g00261 963 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Phco6g00261 963 Gene3D Transferase(Phosphotransferase) domain 1 92 315 - -
Phco6g00261 963 MobiDBLite consensus disorder prediction 742 759 - -
Phco6g00261 963 MobiDBLite consensus disorder prediction 527 544 - -
Phco6g00261 963 MobiDBLite consensus disorder prediction 676 700 - -
Phco6g00261 963 MobiDBLite consensus disorder prediction 603 638 - -
Phco6g00261 963 MobiDBLite consensus disorder prediction 527 559 - -
Phco6g00261 963 SMART serkin_6 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00261 963 SUPERFAMILY Protein kinase-like (PK-like) 7 284 IPR011009 -
Phco6g00261 963 MobiDBLite consensus disorder prediction 605 624 - -
Phco6g00261 963 MobiDBLite consensus disorder prediction 761 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00261 Phco-Chr6 2519261 2526411 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Phco6g00261 Pkinase 2.1e-60 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00261 6 2519261 2526411 Phco6g00261 6 2519261 2526411 ECH