Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00250 ATGGAGCAAACCACGCTTGAAGCCATTCAGTTCAACGAGGAAATCCAAGGCATCATAGCTCCGGCGCCGGAGACCGCAAGTTCCTTCACCGCCCTGCTCGAGCTCCCGCCAACGCAGGCCGTCGAGCTCCTCCACTCGCCGGAGCGAGCCGGGAAGCCACCGCGCCATAATCCGAAACCCTACCCGTTGACCTCATTTGCCTCCGCCTCCGCCGCCAACCTGACCTTCCCGTCAAACGCCGCGTTGATCGAACGCGCCGCCAGGTTCTCCATCTTCGCCGGAGAGAATTCTAACTCGAACTCGAACTCGCCGGAGGTTAAGCGAGAGCTGCCGGAGACCGATTCCAACCCGAGTTCGACTCAGGGCGGCGGCTCCGCCTCCGATCCCACCCTGGAGAACAAGGACGAGAAGGGCCTGAAGAGGAAGGAGCGAGAGAAGAAGGTTAAGGCGTCGTCGAAGAAGAGCAAGAGCGTAGTCGCTGATGAGAGTTCCGGCGACGGCGAGAAGCTTCCGTATGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTGCAAGAGCTGGTCCCGGGTTGCAACAAGATATCAGGAACAGCATTGGTTCTGGATAAAATCATCAACCACGTACAATCTCTACAGCATGAAGTGGAGATATTATCAATGAAACTGGCAGCAGTAAACCCAGTAATTGATTTCAACCTTGACAGCTTATTGGCTACCGAAGGAGTGCCTCCAATGGACTGTAACTTCCCTCCCACAGTTGCACCCGCCGTCTGGCCAGAAATCCCGCAGAATGCAAACAGACAACAATATCAGCAACCGTGGCAATTCGATGCATTCCACCACCAGCCCATTTGGGGCAGGGAAGAAGACAACACTAATTTCATGACTCCAGAAAACTCACTCTTGAGTTATGACTCATCGGCAAATTCAGTATCTCTGCATTCAAATCAGTTGAAGATGGAGCTCTGA 1029 0.5364 MEQTTLEAIQFNEEIQGIIAPAPETASSFTALLELPPTQAVELLHSPERAGKPPRHNPKPYPLTSFASASAANLTFPSNAALIERAARFSIFAGENSNSNSNSPEVKRELPETDSNPSSTQGGGSASDPTLENKDEKGLKRKEREKKVKASSKKSKSVVADESSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPVIDFNLDSLLATEGVPPMDCNFPPTVAPAVWPEIPQNANRQQYQQPWQFDAFHHQPIWGREEDNTNFMTPENSLLSYDSSANSVSLHSNQLKMEL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00250 342 MobiDBLite consensus disorder prediction 94 166 - -
Phco6g00250 342 Gene3D - 178 249 IPR036638 GO:0046983
Phco6g00250 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 250 IPR036638 GO:0046983
Phco6g00250 342 SMART finulus 187 237 IPR011598 GO:0046983
Phco6g00250 342 MobiDBLite consensus disorder prediction 130 166 - -
Phco6g00250 342 Pfam Helix-loop-helix DNA-binding domain 185 232 IPR011598 GO:0046983
Phco6g00250 342 FunFam transcription factor bHLH48-like isoform X1 178 250 - -
Phco6g00250 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 231 IPR011598 GO:0046983
Phco6g00250 342 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 90 326 IPR024097 GO:0006355
Phco6g00250 342 MobiDBLite consensus disorder prediction 113 128 - -
Phco6g00250 342 CDD bHLH_AtBPE_like 171 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00250 Phco-Chr6 2449062 2456089 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco6g00250 HLH 4.2e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00250 6 2449062 2456089 Phco6g00250 6 2449062 2456089 ECH
Phco2g01581 2 46129186 46139102 Phco6g00250 6 2449062 2456089 PCT