Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00247 ATGGATTCCCATACCCATCATCATCAGGATTACCAACTTCATCTCCATCAGAACCAACCCTCTTCTGGGTTGCTTCGTTTTCGCTCTGCACCGAGTTCACTCCTTTCAAATCTCACGCCTTTCGTCAGCTTCGGTGGTGACACTGCTGCTTCAAGTAGCTTCCAGGAGTTGGAAGAAAACAACAACCACAACTGTTGTTCTAAGGATTTGAGTTCGATGAATTCGCATAAGGGTTATGGTGGGGGGTTGCCACCTCACTATCCAAGACATGGTTCTTCTTCTGCTACTTCGAGTTCTTCTATGGAAGGGTCTTATGGGTTGGTGGCTTCAATGGGAATGGATCATGAAGCTCCAAATAAGGGTTTTGGATCAGGTCTTATCAGGCAGAGTAGCTCTCCTGCTGGCCTTTTCTCCAACAACAACGTTTCCTTCCAAAATGGGTTTGTCACCATGAAAGGTGTTGGAAACTATGGTGGGGTGAATGACAATAATAGTGAACTTAGTCCATGTATTAGCAGGTTGAAGAATCATATTAGCTTCTCACCAAGAAATTCTTCTTCCCTAGGAATGTTGTCTCAGATCTCTGAAATAGGGAGTGAAGACATTGAGGCAACTAGTCCTGATGATGATGCCAGTCATGGAGGTAATGATACTCAACATTTTGGCACTGGGTTCCCCTATGGTTCTTGGAGTGAGACTCCACAACTCTGTGAAAATCTCAGTGGCTTGAAAAGAGGGAGAAGTAACAATGAAAAGATCTTTTCTGAAGTTCAGAATGGAGAGCCAGGAAGTCAAGTCAATATATTATCACATCACTTGAGTTTACCAAAAACTTCAGCAGAGATGATTACCATGGAGAAGTTGCTTCAGTTCCCTGATTCTGTTCCTTGTAAAACCAGAGCAAAGCGAGGGTGTGCTACTCATCCTCGAAGCATTGCTGAAAGGGTGAGAAGAACTCGGATCAGTGAAAGAATGAGGAAATTACAAGAGCTTGTCCCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGACTCTTTGTGATAAACGGGCAAACTGCAAGTGTTCAAGCATGCAAAAGGCAGATTCATGA 1140 0.4333 MDSHTHHHQDYQLHLHQNQPSSGLLRFRSAPSSLLSNLTPFVSFGGDTAASSSFQELEENNNHNCCSKDLSSMNSHKGYGGGLPPHYPRHGSSSATSSSSMEGSYGLVASMGMDHEAPNKGFGSGLIRQSSSPAGLFSNNNVSFQNGFVTMKGVGNYGGVNDNNSELSPCISRLKNHISFSPRNSSSLGMLSQISEIGSEDIEATSPDDDASHGGNDTQHFGTGFPYGSWSETPQLCENLSGLKRGRSNNEKIFSEVQNGEPGSQVNILSHHLSLPKTSAEMITMEKLLQFPDSVPCKTRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLCDKRANCKCSSMQKADS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00247 379 MobiDBLite consensus disorder prediction 202 222 - -
Phco6g00247 379 CDD bHLH_AtbHLH_like 310 362 IPR045239 -
Phco6g00247 379 Gene3D - 306 377 IPR036638 GO:0046983
Phco6g00247 379 Pfam Helix-loop-helix DNA-binding domain 310 356 IPR011598 GO:0046983
Phco6g00247 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 369 IPR036638 GO:0046983
Phco6g00247 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 355 IPR011598 GO:0046983
Phco6g00247 379 SMART finulus 311 361 IPR011598 GO:0046983
Phco6g00247 379 MobiDBLite consensus disorder prediction 1 23 - -
Phco6g00247 379 MobiDBLite consensus disorder prediction 76 101 - -
Phco6g00247 379 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 375 - -
Phco6g00247 379 FunFam Transcription factor bHLH130 family 306 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00247 Phco-Chr6 2406611 2409269 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco6g00247 HLH 3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00247 6 2406611 2409269 Phco6g00247 6 2406611 2409269 ECH
Phco2g01587 2 46186129 46188621 Phco6g00247 6 2406611 2409269 PCT