Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00239 ATGGGGTTCTCCATAGCTATTGAATTAGAAGCAGCACAACAACAAGAGCAAGAGACAAAGTTTTTAAGCTCCTCTATGAATATCATGGCTTCTTCAAGTGTTAAGAGCACCAACTCAACAACTCAACTTGAACCACTCCCCCCACATCTTCATCATCAACAACCACCACATCATTTTCATCATCATCAAATACCAGACCAAGAAATCTCTTTCGGGATGATGCCATCTTCCTCATCACACTCTATCCCTGCAAATTACTTAAGCAAAGATTCTGGAGCTTATGATTTGGGAGAATTGGATCAAGCCTTTTTTTTATATCTTGATGGTCAGGCTGACCCTTCTAGTGTTCAAGACCAAAGACAGAACTCATCATCAGGAATGAGGCCACCACCAACTCTCAATATTTTCCCATCTCAGCCTATGCACGCAGTGCCACCATCCAATTCCAAGGTTACCATGGAATTACCCTCCACACAAACCAGTGGCTCCAAGAGACCACCAGGGTCATCCATAGCCAAGCCCAACCCTCACACTGAAGCTCCCTCTGCACCTGAACCACCCAAAGCTGTAAAGCGAGAGGGAAATCGAAAGGGAGCAACCTCAAGTTCTGAGCAGGAAGCACCCAAAACACCAGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCAAGAAAAAGCAGGCTCAGGAAAAAGGCGTACGTTCAGCAGCTAGAGTCAAGTAGGATTAAGCTTAATCAGCTAGAACAAGAGTTACAGCGTGCAAGAGCTCAAGGCATATTAATGGGTGGAAATGCCCTTCTAGGAGGTGAGCAAGGCTTTCCTATGGCTATGAGTGGCATTAGCTCAGAGGCTGCAATGTTCGACGTGGAATATGCGAGATGGTTAGAGGAGCACCAGCGCATAGTGTGTGAGCTAAGAGGTGCAGTGCAAGAACACCTCCATGAAAACGAGCTTCGGTTATATGTGGACAATTGTTTGGCTCACTACGACCAAGTAATGAACCTCAAGAGCATAGTGGCCAAAACAGACGTATTCCACCTTGTTTTTGGCATGTGGAAGACCCCAGCAGAACGTTGCTTTATGTGGATTGGAGGCTTCAGACCCTCTGAACTCATCAAGATTATTCTGGGTCAAATTGAGCCTCTTACAGAGCAACAAATACTTGGGATATGTGGGTTGCAACAATCTACACAAGAGGCAGAAGAGGCTCTTTCACAAGGGCTTGATGCCCTAACCCAATCTCTCTCAGACACTATAACATCAGACTCTTTGTGGTGTCCTCCAAATATGACTAACTACATGGGACAGATGGCTGTGGCAATGAACAAACTCTCCACTCTTGAAAGTTTTGCAAGACAGGCTGATAATCTGAGGCACCAAACCATTCACCGTCTGCACCAACTTCTAACCACACGCCAAGCCGCAAGGTGTTTGGTGGCCATTTCTGAGTACTTCCATCGTCTTCGAGCTCTCAGTTCTCTCTGGTTCACACGCCCTCGCCAAGACTAG 1518 0.4618 MGFSIAIELEAAQQQEQETKFLSSSMNIMASSSVKSTNSTTQLEPLPPHLHHQQPPHHFHHHQIPDQEISFGMMPSSSSHSIPANYLSKDSGAYDLGELDQAFFLYLDGQADPSSVQDQRQNSSSGMRPPPTLNIFPSQPMHAVPPSNSKVTMELPSTQTSGSKRPPGSSIAKPNPHTEAPSAPEPPKAVKREGNRKGATSSSEQEAPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNQLEQELQRARAQGILMGGNALLGGEQGFPMAMSGISSEAAMFDVEYARWLEEHQRIVCELRGAVQEHLHENELRLYVDNCLAHYDQVMNLKSIVAKTDVFHLVFGMWKTPAERCFMWIGGFRPSELIKIILGQIEPLTEQQILGICGLQQSTQEAEEALSQGLDALTQSLSDTITSDSLWCPPNMTNYMGQMAVAMNKLSTLESFARQADNLRHQTIHRLHQLLTTRQAARCLVAISEYFHRLRALSSLWFTRPRQD 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00239 505 Coils Coil 233 260 - -
Phco6g00239 505 FunFam BZIP family transcription factor 213 262 - -
Phco6g00239 505 Pfam Seed dormancy control 305 378 IPR025422 GO:0006351|GO:0043565
Phco6g00239 505 MobiDBLite consensus disorder prediction 32 47 - -
Phco6g00239 505 Gene3D - 213 263 - -
Phco6g00239 505 SMART brlzneu 210 276 IPR004827 GO:0003700|GO:0006355
Phco6g00239 505 SUPERFAMILY Leucine zipper domain 214 256 IPR046347 GO:0003700|GO:0006355
Phco6g00239 505 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 212 256 IPR004827 GO:0003700|GO:0006355
Phco6g00239 505 MobiDBLite consensus disorder prediction 112 132 - -
Phco6g00239 505 MobiDBLite consensus disorder prediction 141 168 - -
Phco6g00239 505 CDD bZIP_HBP1b-like 214 266 - -
Phco6g00239 505 MobiDBLite consensus disorder prediction 32 61 - -
Phco6g00239 505 MobiDBLite consensus disorder prediction 112 217 - -
Phco6g00239 505 PANTHER TRANSCRIPTION FACTOR TGA9 123 504 - -
Phco6g00239 505 Pfam bZIP transcription factor 214 252 IPR004827 GO:0003700|GO:0006355
Phco6g00239 505 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 217 232 IPR004827 GO:0003700|GO:0006355
Phco6g00239 505 ProSiteProfiles DOG1 domain profile. 287 501 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00239 Phco-Chr6 2345937 2352839 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco6g00239 DOG1 2.6e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01599 2 46293573 46299714 Phco6g00239 6 2345937 2352839 PCT