Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00234 ATGGTGTGCAACTACGTCTGCCTGAATGTCGCACTCGTTGTCTTCTCGGCAACTTTGATTTCTTGGTGTTTCGCATTTACGGATCCCGCTGACGTCGCAGCTCTCCAGGATCTGTACACGACCTTGAACAACCCTCTAGCGCTGAAAGGATGGGACGGTAATGATCCTTGTGAGGAATCTTGGACGGGAGTAGCATGTTCTGGGTCATCTGTTATACACCTCAAAATTCAAGGATTAAACCTTACCGGGTATCTTGGAAGCTTCCTCGATAATCTACAAAACTTAAAGCAACTTGATGTCAGTTTTAACAACATACTCGGTGAAATCCCTCGGGGTTTACCTCCGAATGCCACACATATAAATATGGCTTGCAATTATTTCAGCCAAAATATCCCCCATTCGTTGTCAACAATGACAAAACTAAGACACCTGAATTTAAGCCACAATTTCTTGTATGGACCCATTGGCAATGTGTTTACTGGCTTAGATAATCTCAAAGAAATGGACCTTTCGTACAATAATTTCAGCGGTGATCTGCCAAGTTCATTTGGTTCCTTGACATCCCTGGATAGATTATTCCTGCAGAATAACAGATTCACCGGATCAGTCACCTACCTGGCTCAGCTTCCACTCATTGATTTGAACATTCAAGACAATCTGTTTAGCGGCCTTCTTCCACAGCATTTTCAGTCCATACCAAACTTATGGATTGGAGGGAATAAGTTCCAAAGAGTGGACGACTCTCCTCCCTGGGCATTTCCTTTGGACAACGTACCCCTTGAGCAAAATACTAGTCGCCCACCCATAACTCAGGCAAACGCCATTGAGAACTACGCTCCTATTAGAGTAAGGAAACAAAAGAAGAAACGTATCGGTCCCGGAGGAATAGCTTTTATGGTCGGTACAGGAACATTATTGGCAACAGGCTTCGCTCTTTTCATTGCGATCCGTTTGAATAAGCTTTACAAAAAGAGACTGGAGAACTATGAAAGCGACCATAGTTCATTGTCTTCTAATCCAATCAGTGCAACCAAAGAAGATTCTACTACGGCAATAGATGAGAGCCTGCAAATCCCACCTTATAATGCTGCATCCCTTTTGGGTCCAAGGCGATTAACTTCCCAAACCCTTAAAAGAACTGGGGAAACATCAAGAAAAAGTTTTTCCGGAAGAGACAGATTCAATGGAAGGACAAAGGTTTATACAGTAGCGGAGGTTCAGTTGGTTACAAACAGTTTCCATGAAGACAACCTTCTGGGAGAAGGATCCCTTGGTCCTGTTTATAGAGCTGAATTTCCAGATAATAAGGTTTTAGCCGTGAAGAATATCAACATGGCGGGCATGTCTTTCAGTGAAGAGGAGAAGTTCTTAGATGTCGTGTGCACGGCTTCCCGTTTGAAGCACCCTAACATTGTTTCACTTAAAGGCTACTGTTTGGAGCATGGACATCATCTTCTTGTCTTTGACTATGTCAGAAATTTAACTCTAGACGATGCTCTTCATAGTACAGCATACAAACCTTTATCGTGGGGCACACGTCTCCAGATCGCTCTAGGCGTTGGTCAGGCCCTGGATTATTTGCACTCGACGCTCTCCCCTCCTGTCGCCCATGGCAAATTAAAGGCTACCAATGTTCTTCTGGACGAAAACCTCATGCCTCGTGTCACTGACTCTGGCTTGGCTATTCTGAGACCACTGACAAGCAATAAAGTCAAAAACCGGGCTTCCGAAATTGATATTAGAGATACAGGATACGGTTCCCCTGACCATGACCAACCGGGAATTGGCAGCACGAAGAGCGACATTTTTGCCTTTGGAGTGTTGCTTCTTGAACTATTAACAGGAAGAAAACCTTTCGATGGTTCCAGGCCAAGGGAAGAGCACTACCTGGCAAAGTGGGCTTCATCAAGGCTTCATGATAGTGACAGTTTGGAACAGATGGTGGATCCAGCAATCAAACGGACATTTTCATCCAAGGCTCTTTCTCGTTATGCTGATATCATCTCCCTCTGCATTCAGCCCGTAAAGGAATTTCGACCTCCAATGTCTGAAATCGTGAACAATCTAGTATCATTTTCTCGAAAGCTTGTTTCAAAGAGTGGTGCAGCAGATGGAACTGAACTTGATCCACTTGAAATTGAAAGGTCTTTTCACACAACCAGCTCCCGCTTTAACGGTTCACCCGCTCTGAGCTATGTATCCGCCTGA 2208 0.4438 MVCNYVCLNVALVVFSATLISWCFAFTDPADVAALQDLYTTLNNPLALKGWDGNDPCEESWTGVACSGSSVIHLKIQGLNLTGYLGSFLDNLQNLKQLDVSFNNILGEIPRGLPPNATHINMACNYFSQNIPHSLSTMTKLRHLNLSHNFLYGPIGNVFTGLDNLKEMDLSYNNFSGDLPSSFGSLTSLDRLFLQNNRFTGSVTYLAQLPLIDLNIQDNLFSGLLPQHFQSIPNLWIGGNKFQRVDDSPPWAFPLDNVPLEQNTSRPPITQANAIENYAPIRVRKQKKKRIGPGGIAFMVGTGTLLATGFALFIAIRLNKLYKKRLENYESDHSSLSSNPISATKEDSTTAIDESLQIPPYNAASLLGPRRLTSQTLKRTGETSRKSFSGRDRFNGRTKVYTVAEVQLVTNSFHEDNLLGEGSLGPVYRAEFPDNKVLAVKNINMAGMSFSEEEKFLDVVCTASRLKHPNIVSLKGYCLEHGHHLLVFDYVRNLTLDDALHSTAYKPLSWGTRLQIALGVGQALDYLHSTLSPPVAHGKLKATNVLLDENLMPRVTDSGLAILRPLTSNKVKNRASEIDIRDTGYGSPDHDQPGIGSTKSDIFAFGVLLLELLTGRKPFDGSRPREEHYLAKWASSRLHDSDSLEQMVDPAIKRTFSSKALSRYADIISLCIQPVKEFRPPMSEIVNNLVSFSRKLVSKSGAADGTELDPLEIERSFHTTSSRFNGSPALSYVSA 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00234 735 ProSiteProfiles Protein kinase domain profile. 413 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00234 735 Pfam Leucine Rich Repeat 140 153 IPR001611 GO:0005515
Phco6g00234 735 Gene3D Ribonuclease Inhibitor 28 263 IPR032675 -
Phco6g00234 735 Gene3D Phosphorylase Kinase; domain 1 373 490 - -
Phco6g00234 735 Coils Coil 319 339 - -
Phco6g00234 735 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Phco6g00234 735 SMART LRR_typ_2 138 161 IPR003591 -
Phco6g00234 735 SMART LRR_typ_2 92 116 IPR003591 -
Phco6g00234 735 SMART LRR_typ_2 186 209 IPR003591 -
Phco6g00234 735 SMART LRR_typ_2 162 185 IPR003591 -
Phco6g00234 735 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 253 - -
Phco6g00234 735 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 378 490 - -
Phco6g00234 735 SUPERFAMILY L domain-like 33 244 - -
Phco6g00234 735 FunFam Leucine-rich repeat receptor-like protein kinase 491 700 - -
Phco6g00234 735 SUPERFAMILY Protein kinase-like (PK-like) 390 689 IPR011009 -
Phco6g00234 735 MobiDBLite consensus disorder prediction 372 391 - -
Phco6g00234 735 Pfam Protein tyrosine and serine/threonine kinase 416 689 IPR001245 GO:0004672|GO:0006468
Phco6g00234 735 Pfam Leucine rich repeat 158 199 IPR001611 GO:0005515
Phco6g00234 735 Gene3D Transferase(Phosphotransferase) domain 1 492 705 - -
Phco6g00234 735 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 693 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00234 Phco-Chr6 2307482 2312857 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Phco6g00234 PK_Tyr_Ser-Thr 3e-32 CL0016