Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00230 ATGAGTTCTGGTTCAGTAACCAAAGCACCACCCTCTTCCTCCTCATCACCCAACTCTTCCACTGAGTCACTTGATGGCTTGAAGTTTGGCCAGAAAATCTACTTTGAGGATGTGAGTGTTGCAGCTGCAGCAACAACTCAAGGGACCAAAACAAGTGGTGGGGTTTCATCTTCTTCAAAGAAGGGAAGGGGTGGTTCGGTTCAATCAGCTCAGCCTCCTAGATGTCAGGTTCAGGGTTGCAATGTAGATCTGAGTGGAGCTAAGGCTTACTATTCCAGGCACAAGGTTTGTGCCATGCACTCCAAGTCCCCAACTGTCATTGTGGCTTGTCTGGAACAAAGGTTTTGCCAACAGTGTAGCAGGTTTCATATGCTTTCTGAATTTGATCAAGGAAAGAGAAGCTGCCGCCGGCGACTTGCTGGCCATAATGAGCGCCGGCGAAAGCCTCCACCCAGCTCCATATTAACCTCTCGCTATGGCAGGCTTTCTTCCCCTATATTTGATAACAATGGTAGAGCTGGTAGCTTTCTCATGGAATTTGCTTCATATCCAAAGCTTTCATTGAGAAACACCTTGCCAACTCCAAGATCAGACGAGCCACTACCTGGAAACCATGCTGCAGCACTAACCTGGCAGGCCAGCTCAGACACACCTTCTGAATTTTTCCTGCCTGGATCAGGGAGTGGTGGAACAAGCTTCGTTGGTTCCAAACATCCTTTAGTGGAAAGCTACACCGGAGTCACTGACTCAAACTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGAGTTCCAGGACCACACAACCAAGTGTTGAGCTGAACAACAACAACAACAACTTGTTGAATTTCAATGGGAGCTCCATGACACAATTCACTGCTGCTTCCTCACAAGTTGCAGCCATCCATCAACTTCCAAATGCCACCTCATGGTACCTAAAGGCTGTTGACTCGCCGGAGGATGTTCCCGATCTCGGCCTTGGCCAAATTTCGCCGTCTCTTCATAGCCATCTTCATGGTGAGCTTGATGTGCCACATCAGGGTAGGCACTACATGGATCTTGAGGAGTCCAGGGCCTGTGAGTCTTCTCACTGCAAGGGGGTATATCCTTCCTTTGGTTGTGGATCTTTGAACATTGGAACCCTTATTTTGTTTGATGTTATGAGCAAGGTTGTTAGTAATGATAGGGTGCAGGAAGCAAAAGCCCTACAGGATTCTTCTTACATTAGCACACTGCAATAG 1239 0.477 MSSGSVTKAPPSSSSSPNSSTESLDGLKFGQKIYFEDVSVAAAATTQGTKTSGGVSSSSKKGRGGSVQSAQPPRCQVQGCNVDLSGAKAYYSRHKVCAMHSKSPTVIVACLEQRFCQQCSRFHMLSEFDQGKRSCRRRLAGHNERRRKPPPSSILTSRYGRLSSPIFDNNGRAGSFLMEFASYPKLSLRNTLPTPRSDEPLPGNHAAALTWQASSDTPSEFFLPGSGSGGTSFVGSKHPLVESYTGVTDSNCALSLLSNQTWSSRTTQPSVELNNNNNNLLNFNGSSMTQFTAASSQVAAIHQLPNATSWYLKAVDSPEDVPDLGLGQISPSLHSHLHGELDVPHQGRHYMDLEESRACESSHCKGVYPSFGCGSLNIGTLILFDVMSKVVSNDRVQEAKALQDSSYISTLQ 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00230 412 ProSiteProfiles Zinc finger SBP-type profile. 72 149 IPR004333 GO:0003677
Phco6g00230 412 FunFam Squamosa promoter-binding-like protein 14 66 136 - -
Phco6g00230 412 MobiDBLite consensus disorder prediction 46 74 - -
Phco6g00230 412 Pfam SBP domain 75 148 IPR004333 GO:0003677
Phco6g00230 412 Gene3D - 65 136 IPR036893 GO:0003677|GO:0005634
Phco6g00230 412 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 310 IPR044817 GO:0003677
Phco6g00230 412 MobiDBLite consensus disorder prediction 1 24 - -
Phco6g00230 412 SUPERFAMILY SBT domain 73 154 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00230 Phco-Chr6 2283597 2288882 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phco6g00230 SBP 7.2e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00230 6 2283597 2288882 Phco6g00230 6 2283597 2288882 ECH
Phco2g01609 2 46408764 46412346 Phco6g00230 6 2283597 2288882 PCT