Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00228 ATGAACGAGTACAAGATTGACTGTGTTGGACGGATTCAACAAAGCTATGCTCTAAATGGGGATTTGAGTTCAGAGTTTAGCAATTGTTCTAGTCAATATTTTGATATTATACAGGCTTCAAATATGGGAACTTGCAATCAGCCACTTGCTATGGTCAGTGGTGAAGGAGTGGAACAGGAACCACACATAGGCCAAACCAAATCATCTAGCAGCATTATCAGCCGTTTTGAGTCACCAGCTTCAGCCTTTTATGCAACAGAAATCTGCATGGGTTTCCCACAATATGATAGATTAGTTGGGAACCCCTCTTTGATATCTCAATTCTCTAAGATTAGTGATGTGGAATTCCCTTTGTATCAATCTCCCAGGCAAAACCTTTTCTTGGCTTCATTGGCAAACCAACCTGCCCCCAACTTTGAGTTGTCAAATCCCTTGCAAGCAATGCTCTTATCTCATTTTAATGGTGATCAATGTGTTAGATCTCCTGAAAAATCTAATAAAATCCCATGTGGGAATTTCCCTGGCAGCAGTTTTCTTCCAACTGAACAACCGAAGTTGTTCATTGATGATGCTGCAAGCCCTTCAATTCCTTCTAAAGGAAATCAGGATCAAACAGATTCTTGTGGCTCATACAATTTACCTGCTGCACAGATTAGCTTCTCTTCTCAGCAAGAGATGCTGTCACCAGCACTAGCAGGTAGCTTGTTAACTTCTTCTGGAAACTCTACTTCAAATGGACCAGTAAGTAAAACAAGAATAAGATGGACTCAGGAACTTCATGAGCAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGTGCTGAGAAAGCAACGCCAAAAGCTATACTAAGGCTGATGGAATCAGATGGATTGACCATCTTCCATGTTAAAAGTCATTTGCAGAAATATAGAATTGCCAAATACATGCCACAATCAACTCAAGGGAAATCTGAGAAAAGAATCAATGTAGAGAATGTGCATCTTGATGCCAAAACTGGATTACAAATTAGAGAGGCACTTCAGTTGCAGTTAGATGTTCAGAGGCGCCTTCATGAACAACTAGAGATTCAGAGAAAATTACAGTTGAGGATTGAGGAGCAAGGTAAGCAGCTGAAAATGATGTTTGATCAGCAGCAGAAGACAAGTGATAGCAACTTGAGTACTCAGAATTTGGGCGATACAACTAATAATGATAGAACTATTAGTTCTAGAGATGTTCAGGTTTCCATTTCTGAAGGGTCTGAAAAATTCCTCATTCCTTCCAACATAACTTAG 1272 0.4009 MNEYKIDCVGRIQQSYALNGDLSSEFSNCSSQYFDIIQASNMGTCNQPLAMVSGEGVEQEPHIGQTKSSSSIISRFESPASAFYATEICMGFPQYDRLVGNPSLISQFSKISDVEFPLYQSPRQNLFLASLANQPAPNFELSNPLQAMLLSHFNGDQCVRSPEKSNKIPCGNFPGSSFLPTEQPKLFIDDAASPSIPSKGNQDQTDSCGSYNLPAAQISFSSQQEMLSPALAGSLLTSSGNSTSNGPVSKTRIRWTQELHEQFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPQSTQGKSEKRINVENVHLDAKTGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTSDSNLSTQNLGDTTNNDRTISSRDVQVSISEGSEKFLIPSNIT 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00228 423 Gene3D - 249 308 - -
Phco6g00228 423 SUPERFAMILY Homeodomain-like 248 304 IPR009057 -
Phco6g00228 423 Coils Coil 336 356 - -
Phco6g00228 423 MobiDBLite consensus disorder prediction 374 398 - -
Phco6g00228 423 Pfam MYB-CC type transfactor, LHEQLE motif 333 380 IPR025756 -
Phco6g00228 423 FunFam Myb family transcription factor 249 307 - -
Phco6g00228 423 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 232 389 IPR044848 GO:0003700
Phco6g00228 423 Pfam Myb-like DNA-binding domain 254 303 IPR001005 -
Phco6g00228 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 249 307 IPR017930 -
Phco6g00228 423 NCBIfam myb-like DNA-binding domain, SHAQKYF class 250 305 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00228 Phco-Chr6 2262360 2265539 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco6g00228 Myb_DNA-binding 5.5e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00228 6 2262360 2265539 Phco6g00228 6 2262360 2265539 ECH