Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00219 ATGGCCTCCAAAGGTCCCAGGTCTAAGATTGATCACGAGAGCAGAGCCAAAAGACAAAAGGCTCTTGAAGCTCCTAGGGAGCCTCGGCGACCCAAAACTCACTGGGACCATGTCTTAGAAGAAATGGTGTGGTTATCAAAGGATTTTGAATCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTAGCTCTAAGAGCCAGCAAAGGCATGATAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAACATCGGCTAAGAAAGGTTGCGCTAAATATTTCTAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAACATCAAATGGAACTCGATGAGAAGAAGAAAAAGGCACTTGACAAACAACTTGAGTTTTTATTAGGGCAAACCGAGAGGTACTCAACAATGCTGGCAGAAAATCTTGTGGATGCTCATAAATCAGGAGAGAATAATTCTGCAGAGCATCACATGAGTATTCAACGCAAGGATGTACATGGAGATGTTATTAATGAACCTAAGGAAGCTGATGTTGTGGAGTATCAATCAGATGCTGCCGACAATGATGATGAATATGATGTACAATCTGATGATGAATCGGAGGATGATGAGCAAACAATTGAGCAAGATGAGGCTTTTATTACTAAAGAAGAGAGACAAGAGGAATTGGAAGCTTTGCATAATGAAATGGATCTTCCGATTGAGGAGTTACTCAAACGTTATGCAGGGGAGAAAGGAGAATCTGTGATGAAAGAAAGTAGTCCAGAGCACAGTGAAGATGTTGAGAAAATAGTTAGAACAACTGGTGATGGTAAGAAAGGATTAGCATCAGAAAATGGTGATGATCATTTATCTGTTAGCAAAATTGGTCCAAACAACTCCAGCATGGTCTCTGGTCGACGTTGTGATGAAAGTAATGGTGATGTTGCTACACCGACAAACAATCTATCTCAATGTGAGGATGGTCAATCTGAAAATCTAAAAGGGGTTCCCTGTGAGACAGCCAATGAAGATTTTGCGTATGATTTTACTGATGAAGAGGAAGATGGCGACTTTTTGCTTGGCACAGAAGAAAAGGATGATGAAACAACCTTATCAGAGGAGGAAAAACTGGAAAGAGTTGATACAATAGATCCCAATGATGAGATTGCATTATTACAAAAAGAGAGTGACATGCCTGTTGAGGAACTGCTTGCAAGGTATAAAAGGGACCCGAGTGACAAAGAAGATGGGGGATATGAATCTGACTATGCTTCTGCTTTATCCGAAGACCATTCGGATTCTCCTGTCCATGAAGATGCTGGGCAAAAGGATTCTGCCATTCCTATGGATGAAGATATCAAGTCTGGTGAGCACCTGGCTACTATACAGACCCAGGCAGATGAACATTGGGAATCACCTCATGAAAATTTGGATCAAAGAGAAAGCGAGCATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCTACCGGAAACACCTTCTCCACAACTAATGTGCGTACAAAGTTCCCTTTTCTTCTCAAGTACTCTCTTCGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACGATGTATGAAAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGTCTCGGTAAAACAATTATGACTATATCTTTGCTTGCACATCTTGCTTGTGAAAAAGGGATTTGGGGTCCACATTTAATTGTGGTACCAACTAGTGTAATGCTTAACTGGGAGACCGAATTTCTGAAATGGTGTCCTGCCTTTAAAATTTTGACTTATTTTGGAAGTGCGAAGGAGCGAAAACTTAAAAGGCAAGGATGGTTAAAACCAAACTCATTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAATCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAACGACGGATTCTCTTGACTGGTACGCCACTACAAAACGATCTCATGGAACTGTGGTCTCTTATGCATTTCTTAATGCCCCATGTTTTCCAGTCGCATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAAGAAAAAATTAATAAGGAGGTTGTTGACCGCCTGCACAATGTCCTTCGTCCCTTTTTACTCCGTCGACTAAAGCGAGATGTGGAAAAGCAACTTCCAATGAAGCATGAACATGTCATATATTGTAGATTATCAAAGAGGCAGCGGAATTTGTATGAGGATTTCATTGCTAGCTCAGAGACTCAAGCAACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAAGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCGATTGTCAGTTCTTTTGATATTTGTGGTATTGATATTCAATTAAGTTCTTCCGTTTGCTCTATGCTTTTGCCTAGCCCCTTTTCAGTGGTGGACCTAAGAGGATTGGGTCTTTTATTCACTGATCTTGACTATAGCATGGCTGCTTGGGAAAGTGATGAAGTACAAGCTATTGAGACCCCTGCAACCTCAATCATGGAACGAACTGACGTAGATGAGCTAGAAGTAATTAGGCCACTGAAATATCAAAAAAAGTTGCAAGGAACAAACATTTTTGAAGACATCCAGAGGAAAATCTGGGAAGAGAGGCTAAACCAAGCAAGGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAAAAGACCTATGTACTCAACAACTCTGAGGGATCTTGTTACCTTGAGACATCCTGTATATGATATTCACCAGGTGAAAGCAAACCCTGCTTCGTACATGTACTCAACAAAACTAGCTGACATTGTTCTCTCCCCCATTGAACGATTTCAAAAGATGACTGACGTGGTTGAAAGCTTCATGTTTGCAATTCCAGCTGCACGGGCACCCTCTCCTGTTTGCTGGTGCAGTACGAGTGAGACAAATGTGTTTCTGCAGCCATCTTACAAGCAGCAATGCTCTGAAGTTTTGTTACCGCTACTGTCACCAATCCGACTTGCAATTGTTCGCCGACAAGTGTATTTCCCTGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAACTGGCAAATTTGTTGAGAAAATTAAAATCAGAAGGTCACCGAGCTTTGATATTCACCCAAATGACAAAGATGCTTGACATATTAGAGGCATTCATTAATTTGTATGGCTATACATACATGCGCTTAGATGGATCAACCCAACCGGAGGAGAGACAGACCTTAATGCAGCGCTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCACAAGATCGATGCCACAGAATTGGTCAGACACGGGAAGTTCATATTTATAGATTGATTAGTGACAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATAATTTAGTTATACAAAGTGGGGCTTATAATACTGAGTTCTTCAAGAAGCTCGATCCTATGGAACTATTTTCAGGTCATAGAACACTTTCAATAAAAAATATGCCGAAGGAGAAAAACCAGAACAGTGGGGAAGTTTCTGTAACGAATGCAGATGTAGAGGCTGCATTGAAATGTGTTGAAGATGAGGCAGATTACATGGCTTTGAAGAAAGTTGAACTGGAAGAAGCTGTGGACAACCAGGAGTTTACAGAAGAAGCCATTGGGAGACTTGAAGAGGATGAATATGTAAATGAAGATGATGAAACTCCAGAATTAGGTGAATCTGTTTCGAACTTAAATAAAGAGAATGCATTAATGTTAAATGGAAGTGATCATAAGGAAGATAGACCGCTAAACTCTGTTGCTGTCAAAGAAGATGATGCTGATGTGCTGGCTGATGTCAAACAGATGGCTGCAGCTGCTGCTGCAGCTGGACAAGCTATCTCAGCATTTGAAAATGAGTTACGCCCTATTGATCGATATGCCATTCGCTTTCTGGAACTGTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGAATTGAGGATACAGAATGGGAATTGGATCGCATCGAAAAGTACAAGGAAGAGATGGAGGCTGAAATCGATGAAGATGAGGAACCTCTTGTTTATGAAAGCTGGGATGCTGATTTTGCAACAATGGCCTATCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAGTTGATGGAGGAACTCGAATATGAAGCTAGACTGAAAGAAGCTGAGGAAGAAGCTTGTGATTCTAAAAAGACAACACCAGGGGATTTGAAGCCCAAACCTAAAAAGAAACCTAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGATCTTTAACTTCTGGCTTGAAACCTGTGAAAGAAGAGTCACAAGCAGAGCCAATGAACATAGATGACGAGGATGTCACTGCTCTGGATTTTGTGTCTCCAAATTCAACCATGCAGAAAAAACGGAAGTCTAAAGTAAGAACTGACGGTGAAGAAAAGAGACTTAAGAAGTCCAAAAAGTTCAAGAGGGATCCTCAAGACATTTATGCGTCCGATTTAGAATCCAATGCTTTAGTTGTCCAATATGAACATGCAGAATCAAAGACTTGTGATAGTCTGGTTGATTTGGAACAGAAAACAGCAGGCAGGGGTAAGATGGGAGGAAAAATATCCATCACTCCTATGCCTGTAAAACGGATCTGGACGATAAAGCCAGAAAAAATGAGAAAGGGAAATCATTGGTCCAAAGATTGTATTCCATCAGCTGATTTTTGGTTGGCTCAGGAGGATGCAATATTATGTGCTGTTGTTCATGAATATGGCCCTAACTGGAGTTTGGTTAGTGATATTCTTAATAGCATGACTGCTGGCGGGTCATACAGGGGGAGATATCGACATCCTGTCCATTGCTGTGAGCGGTTCAGAGAACTATTCCAGAAGAATGTCTTGTCAATGGACAATGCAAATAATGAGAAGATCATCACTCCTGGTTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATACGGATGCTGTTAGATGTTGCTTCTGAGCAGGTAAATAGGGAGTTGCTGCTGCAGAAGCATTTTTTTGCATTACTTTCATCTGCCTGGAAGGTGGCATCACATGTTGACCGCAGGCAAAATCCATCACCCACCTGTAATGGTCTCTATTTCGATCAGAGTCATTTTACTTCCATAGGCCAGCCTTTGCAAAATTCCTTGAAGAAATCCTCTGAAAGGATGCCATTTGCAAATATGGCCCAGAGTAAGAAGTTGGTAGCAGCTGCACTTGATGATACCACAACTGGGCAAGTGAATGACAGAGTCATCCTCTCTAACCAAGGAGACGGCATGCCAATGAGTGCAGATCAGCTGGATATAACTCTGGAATTCCCAAAAGAGGAGAGTGATGTCTTAGCCTTGTTTCCTTCTGTTATAAATTTATCGATACATGGGACTGAACCAGCAGCATCTTTAAGTAAGCAAACAGGAGAAGATGACTTTAAAGTTGGTCTGTTCATTGCTGAGAATCGTTTCAGGGAAGCAACAAGAATTTGTGAAGAAGACATCTCTGGATGGGCATCATCTGTGTTCCCAACCAGCGATGCAAGATCTCGACCTGGATCCAGGATACAATCATCTGGAAAGCAGAAGTCTTCCATATCTGACTCTGCTAAGCCTTCTAGGTCGAAGTCCAAAAGAGCTTCAATTGATCCTAGCGAAATGCATCACCATCAGGCTGACTCAATATTCCAGTCAGTGCCATCACTTAAGGATCTGAGATTTGATCTTGCTTCGTTCACTACAGATGAAGTTGGACTTAATGCTGTGGATAGATGTTTCCCCTTTGACTTGAATGGGGAAAGTTCATGGGAAATGGAGGGTGTTGGAATGATCCCACATGATTATGTTACTGGTTTAATCTCAGACCTTGATGATTGTACAACATTCCCTGAATATACTGACATTAGATGA 6147 0.4113 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMIDQATRGEKKMKEEEHRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAHKSGENNSAEHHMSIQRKDVHGDVINEPKEADVVEYQSDAADNDDEYDVQSDDESEDDEQTIEQDEAFITKEERQEELEALHNEMDLPIEELLKRYAGEKGESVMKESSPEHSEDVEKIVRTTGDGKKGLASENGDDHLSVSKIGPNNSSMVSGRRCDESNGDVATPTNNLSQCEDGQSENLKGVPCETANEDFAYDFTDEEEDGDFLLGTEEKDDETTLSEEEKLERVDTIDPNDEIALLQKESDMPVEELLARYKRDPSDKEDGGYESDYASALSEDHSDSPVHEDAGQKDSAIPMDEDIKSGEHLATIQTQADEHWESPHENLDQRESEHIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKINKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDICGIDIQLSSSVCSMLLPSPFSVVDLRGLGLLFTDLDYSMAAWESDEVQAIETPATSIMERTDVDELEVIRPLKYQKKLQGTNIFEDIQRKIWEERLNQARERAAAIAWWNSLRCKKRPMYSTTLRDLVTLRHPVYDIHQVKANPASYMYSTKLADIVLSPIERFQKMTDVVESFMFAIPAARAPSPVCWCSTSETNVFLQPSYKQQCSEVLLPLLSPIRLAIVRRQVYFPDRRLIQFDCGKLQELANLLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISDSTIEENILKKANQKRALDNLVIQSGAYNTEFFKKLDPMELFSGHRTLSIKNMPKEKNQNSGEVSVTNADVEAALKCVEDEADYMALKKVELEEAVDNQEFTEEAIGRLEEDEYVNEDDETPELGESVSNLNKENALMLNGSDHKEDRPLNSVAVKEDDADVLADVKQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATMAYRQQVEALAQHQLMEELEYEARLKEAEEEACDSKKTTPGDLKPKPKKKPKKAKFKSLKKGSLTSGLKPVKEESQAEPMNIDDEDVTALDFVSPNSTMQKKRKSKVRTDGEEKRLKKSKKFKRDPQDIYASDLESNALVVQYEHAESKTCDSLVDLEQKTAGRGKMGGKISITPMPVKRIWTIKPEKMRKGNHWSKDCIPSADFWLAQEDAILCAVVHEYGPNWSLVSDILNSMTAGGSYRGRYRHPVHCCERFRELFQKNVLSMDNANNEKIITPGSGKALLKVTEDNIRMLLDVASEQVNRELLLQKHFFALLSSAWKVASHVDRRQNPSPTCNGLYFDQSHFTSIGQPLQNSLKKSSERMPFANMAQSKKLVAAALDDTTTGQVNDRVILSNQGDGMPMSADQLDITLEFPKEESDVLALFPSVINLSIHGTEPAASLSKQTGEDDFKVGLFIAENRFREATRICEEDISGWASSVFPTSDARSRPGSRIQSSGKQKSSISDSAKPSRSKSKRASIDPSEMHHHQADSIFQSVPSLKDLRFDLASFTTDEVGLNAVDRCFPFDLNGESSWEMEGVGMIPHDYVTGLISDLDDCTTFPEYTDIR 2048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00219 2048 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 533 698 IPR014001 -
Phco6g00219 2048 SMART helicmild6 1091 1174 IPR001650 -
Phco6g00219 2048 SMART bromneu2 23 94 IPR014012 -
Phco6g00219 2048 MobiDBLite consensus disorder prediction 156 188 - -
Phco6g00219 2048 SMART ultradead3 517 710 IPR014001 -
Phco6g00219 2048 CDD DEXQc_SRCAP 521 743 - -
Phco6g00219 2048 SUPERFAMILY Homeodomain-like 1645 1705 IPR009057 -
Phco6g00219 2048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 743 IPR027417 -
Phco6g00219 2048 MobiDBLite consensus disorder prediction 355 444 - -
Phco6g00219 2048 Coils Coil 1402 1422 - -
Phco6g00219 2048 MobiDBLite consensus disorder prediction 1 33 - -
Phco6g00219 2048 Pfam HSA domain 27 93 IPR014012 -
Phco6g00219 2048 Gene3D - 1630 1704 - -
Phco6g00219 2048 MobiDBLite consensus disorder prediction 153 214 - -
Phco6g00219 2048 MobiDBLite consensus disorder prediction 189 214 - -
Phco6g00219 2048 MobiDBLite consensus disorder prediction 274 339 - -
Phco6g00219 2048 MobiDBLite consensus disorder prediction 1471 1565 - -
Phco6g00219 2048 Gene3D - 1037 1280 IPR027417 -
Phco6g00219 2048 MobiDBLite consensus disorder prediction 1951 1969 - -
Phco6g00219 2048 CDD SF2_C_SNF 1050 1185 - -
Phco6g00219 2048 MobiDBLite consensus disorder prediction 293 331 - -
Phco6g00219 2048 MobiDBLite consensus disorder prediction 1471 1486 - -
Phco6g00219 2048 MobiDBLite consensus disorder prediction 1921 1950 - -
Phco6g00219 2048 Pfam Helicase conserved C-terminal domain 1062 1174 IPR001650 -
Phco6g00219 2048 Coils Coil 1452 1472 - -
Phco6g00219 2048 FunFam Photoperiod-independent early flowering 1 491 766 - -
Phco6g00219 2048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 745 1250 IPR027417 -
Phco6g00219 2048 Coils Coil 1278 1298 - -
Phco6g00219 2048 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Phco6g00219 2048 MobiDBLite consensus disorder prediction 373 421 - -
Phco6g00219 2048 Pfam Myb-like DNA-binding domain 1647 1713 - -
Phco6g00219 2048 Gene3D - 767 823 - -
Phco6g00219 2048 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1065 1215 IPR001650 -
Phco6g00219 2048 MobiDBLite consensus disorder prediction 355 372 - -
Phco6g00219 2048 MobiDBLite consensus disorder prediction 1544 1565 - -
Phco6g00219 2048 MobiDBLite consensus disorder prediction 1921 1971 - -
Phco6g00219 2048 Gene3D - 490 766 IPR038718 -
Phco6g00219 2048 Pfam SNF2-related domain 538 810 IPR000330 GO:0005524|GO:0140658
Phco6g00219 2048 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 767 832 - -
Phco6g00219 2048 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1032 1281 - -
Phco6g00219 2048 PANTHER HELICASE SRCAP-RELATED 15 1944 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00219 Phco-Chr6 2161436 2178027 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco6g00219 SNF2_N 8.2e-70 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00219 6 2161436 2178027 Phco6g00219 6 2161436 2178027 ECH