Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00218 ATGGACCTTCGCAAGCGTGGAAGGCCCGAACCCGCCGTCAGCCTTAACGGCACCGTTAAGAAGACCAAGCAAGACTTGGAGTCCTTATCAGGTGGTGTAGGAAGCAAATCGAAGCCCTGTACCAAGTTTTTCAGCACTGCTGGCTGCCCGTTTGGTGAGGGCTGCCATTTTTTGCATTATGTTCCTGGTGGTTATAATGCGGTTGCCCATATGATGAATTTAAAACCTGCTGCTCCTCCACCGAGAGCTGTTGCTGCACCCCCTCCGGTCCCTAATGGCTCTGCTCCATCTGCTGTTAAAACACGCATATGTAACAAGTTCAATACTGCTGAAGGGTGCAAATTTGGTGACAAGTGCCATTTTGCTCATGGTGAGTGGGAACTTGGCAAACCTATTGCTCCCTTAATTGATGATCATCGACCTTTGGGACCTCCAGCAGCTGGTCGTATGGCTGGTCGAATTGAGCCTCCTCCCTTGGCGGGTAGCTTTGGCGCCATTTCTACTGCCAAGATCAGTGTAGAAGCTTCTTTGGCTGGAGCTATTATTGGGAAGGGTGGTGTGAACTCGAAGCAGATCTGTCGCCAAACAGGAGCGAAACTTTCAATCCGAGAGCACGAGACTGATCCAAACCTTAGAAACATTGAACTTGAGGGAACTTTCGAACAGATAAAGGAGGCAAGTAATATGGTAAAAGATTTACTTTTGACTGTTTCAATGTCTGCCCCTCCCAAATCCAACCCAGGTGTTCCTGGTGCCCCGGCTCCTCCTGGAAGCAACTTCAAGACCAAGCTGTGTGAGAATTTTGCAAAAGGATCTTGCACCTTTGGAGATCGATGCCACTTTGCTCATGGAGCTGGTGAATTGCGCAAGCAGGGGGTATGA 882 0.4943 MDLRKRGRPEPAVSLNGTVKKTKQDLESLSGGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLKPAAPPPRAVAAPPPVPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKPIAPLIDDHRPLGPPAAGRMAGRIEPPPLAGSFGAISTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHETDPNLRNIELEGTFEQIKEASNMVKDLLLTVSMSAPPKSNPGVPGAPAPPGSNFKTKLCENFAKGSCTFGDRCHFAHGAGELRKQGV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00218 293 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 155 236 IPR036612 GO:0003723
Phco6g00218 293 ProSiteProfiles Zinc finger C3H1-type profile. 259 286 IPR000571 GO:0046872
Phco6g00218 293 SMART kh_6 165 235 IPR004087 GO:0003676
Phco6g00218 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 284 IPR000571 GO:0046872
Phco6g00218 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Phco6g00218 293 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Phco6g00218 293 SUPERFAMILY CCCH zinc finger 97 129 IPR036855 GO:0046872
Phco6g00218 293 CDD KH-I_AtC3H36_like 169 234 - -
Phco6g00218 293 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Phco6g00218 293 FunFam Zinc finger CCCH domain-containing protein 93 130 - -
Phco6g00218 293 FunFam Zinc finger CCCH domain-containing protein 254 290 - -
Phco6g00218 293 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Phco6g00218 293 Gene3D K Homology domain, type 1 164 257 IPR036612 GO:0003723
Phco6g00218 293 SUPERFAMILY CCCH zinc finger 259 289 IPR036855 GO:0046872
Phco6g00218 293 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Phco6g00218 293 Pfam KH domain 169 231 IPR004088 GO:0003723
Phco6g00218 293 SMART c3hfinal6 259 285 IPR000571 GO:0046872
Phco6g00218 293 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Phco6g00218 293 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Phco6g00218 293 ProSiteProfiles Type-1 KH domain profile. 166 230 - -
Phco6g00218 293 Gene3D - 93 130 - -
Phco6g00218 293 Gene3D - 258 291 - -
Phco6g00218 293 PANTHER CCCH ZINC FINGER/TIS11-RELATED 23 134 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00218 Phco-Chr6 2151569 2155636 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco6g00218 KH_1 8.8e-12 CL0007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01629 2 46590266 46592920 Phco6g00218 6 2151569 2155636 PCT