Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00208 ATGCAGCTCCCTTGGTTAGTCAAATATCAATATGCAGCAACACTCTTGGTTACCATTGCCCTTACCAAAGTTACCTGTTTTCATTTCAATTTCCCTACCTTCCAACCACAGGATGAGTCTAATCTATTGCTGCACAAGAATGCAAAAATATACTTAGATGCAATCCAAGTAACCCCTGATATTCGTGGTCCTATACATAACTATTCTGGACGTGCTTTCTACAGAAAGCCATACCAACTTTGGAAACAGAAGAAGAACCAAAACCAAATAGCTTCCTTCAACACCACTTTTGTGCTCAACATCACTCCACAAACTACCCCTGGTGGTGAAGGTTTGGCCTTCATCTTAACTTCAGATACGACTCTACCAGAAAACAGTGATGGAGAATGGCTTGGTATTGTAAATGCTACTTCCAATGGAACTTCACAAGCTGGTATTCTAGCAGTGGAGTTTGACACAAGACACAGTTTCACAGAAGATGGCCCTGACAATCATGTTGGCATCAACATAAACAGCATCAACTCCATCCAACAGGTTTCGTTAATAAACGCTCGGGTCAATCTTTCATCAGGTCAAGATGTCAAATTTCGCATTCAATACATTAATGACATAATATCGGTTTTTGGTGCCACGAATGGAACTTCTGAAGAATCTATGGAGATCCTCTTGGTAACTCCACCTCTTAATTTATCTTCCTTTCTTCAACAAGAGGTTTACCTTGGTTTCTCCGGCTCAACAAGTAACTACACGCAGCTGAATTGTGTAAGATCGTGGGAATTCAGTGGTGATGATATTAGAGATAATGTCCAAAGTCTCTTGTGGATTTATGTTACTGTTCCAACCGTGATTGTTTTTATTATCATTGGTGGGTTGGTGATATTTTTCTTGCGCCGGAAAAAGAGTCGCCATATGGAGGGGCCAGAAGATGCATATCCAAGGATAGAGGATCAGATTCAATATTCCTCTATGGCTCCAAAGAAGTTTAGGCTAAAGGAAATAACAAAAGCAACTGGTGGATTCAGCCCTCAAAACAAGCTTGGACAAGGTGGGTTTGGAACTGTGTATAAAGGGCTATTGGAAAATAAGGAGGTAGCTGTAAAGAGGGTCTCCAAGAACTCACGCCAAGGGAAGCAAGAGTTTGTGGCAGAAGTGACAACAATAGGAAGTCTTCACCATAGAAATTTGGTGAAACTCACTGGTTGGTGCTATGAGAATAAAGAGCTCCTCCTCGTATACGAGTTCATGCCTAATGGCAGCCTAGACAAGTACCTCTTTGGTGAAATTAATTTTGGTAATTGTGGCCTTGAAGGAGGGTATTCTCTAACACTGGATTGGGAAACTAGGCACAGAGTGATACATGGGGTGGCTCAAGCACTTGACTACCTACACAATGGGTGTGAGAAGAGGGTTCTCCACAGAGACATCAAGGCCAGCAACATAATGCTGGACTCAGATTACAATGCCAAGTTGGGAGACTTTGGATTGGCTAGAACAATTCAGCAGAGAAATGAAACACATCACTCTACAAAAGAGATTGCAGGCACACCCGGGTACATGGCCCCAGAAACCTTTCTCACTGGAAGGGCAACAGTGGAGACAGATGTGTATGCATTTGGGGTTCTTGTGTTGGAAGTAGTGTGTGGAAAGAGGCCAGGGAATGTGTATGCACAAGATGACTATAAGAACAGCATTGTGTATTGGGTGTGGGATTTGCATGGGAAGGGAAAAGTAGTTGGTGCTGTTGATGGAAGGTTGAAGAAGGAGGAGATTAAGGAGGAAGAGGTGGAGTGTGTTCTTGTTCTTGGCTTGGCTTGTTGCCATCCAAACCCACACCAAAGGCCATCCATGAGAACTGTCCTTCAGGTTCTGAATGGGGAAGCACCTCCACCTGAAGTGGCTAAGGAAAGACCAGCTTTTATGTGGCCTGCTGTGCCTCCATCCTTCAAAGAAGCTGAAGATAGCTCCCTCATCCAGGGAACACTCACTCCTTTCACTGAAATCACTGGAAGGTGA 2013 0.4352 MQLPWLVKYQYAATLLVTIALTKVTCFHFNFPTFQPQDESNLLLHKNAKIYLDAIQVTPDIRGPIHNYSGRAFYRKPYQLWKQKKNQNQIASFNTTFVLNITPQTTPGGEGLAFILTSDTTLPENSDGEWLGIVNATSNGTSQAGILAVEFDTRHSFTEDGPDNHVGININSINSIQQVSLINARVNLSSGQDVKFRIQYINDIISVFGATNGTSEESMEILLVTPPLNLSSFLQQEVYLGFSGSTSNYTQLNCVRSWEFSGDDIRDNVQSLLWIYVTVPTVIVFIIIGGLVIFFLRRKKSRHMEGPEDAYPRIEDQIQYSSMAPKKFRLKEITKATGGFSPQNKLGQGGFGTVYKGLLENKEVAVKRVSKNSRQGKQEFVAEVTTIGSLHHRNLVKLTGWCYENKELLLVYEFMPNGSLDKYLFGEINFGNCGLEGGYSLTLDWETRHRVIHGVAQALDYLHNGCEKRVLHRDIKASNIMLDSDYNAKLGDFGLARTIQQRNETHHSTKEIAGTPGYMAPETFLTGRATVETDVYAFGVLVLEVVCGKRPGNVYAQDDYKNSIVYWVWDLHGKGKVVGAVDGRLKKEEIKEEEVECVLVLGLACCHPNPHQRPSMRTVLQVLNGEAPPPEVAKERPAFMWPAVPPSFKEAEDSSLIQGTLTPFTEITGR 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00208 670 ProSitePatterns Protein kinases ATP-binding region signature. 346 367 IPR017441 GO:0005524
Phco6g00208 670 FunFam Probable L-type lectin-domain containing receptor kinase S.5 26 269 - -
Phco6g00208 670 ProSiteProfiles Protein kinase domain profile. 340 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00208 670 Gene3D - 25 271 - -
Phco6g00208 670 FunFam probable L-type lectin-domain containing receptor kinase S.5 415 629 - -
Phco6g00208 670 CDD lectin_legume_LecRK_Arcelin_ConA 27 261 IPR001220 GO:0030246
Phco6g00208 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Phco6g00208 670 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 261 IPR013320 -
Phco6g00208 670 CDD STKc_IRAK 346 625 - -
Phco6g00208 670 Pfam Protein kinase domain 343 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00208 670 PANTHER - 56 630 - -
Phco6g00208 670 Gene3D Transferase(Phosphotransferase) domain 1 415 630 - -
Phco6g00208 670 Pfam Legume lectin domain 28 267 IPR001220 GO:0030246
Phco6g00208 670 SMART serkin_6 340 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00208 670 Gene3D Phosphorylase Kinase; domain 1 325 414 - -
Phco6g00208 670 SUPERFAMILY Protein kinase-like (PK-like) 321 623 IPR011009 -
Phco6g00208 670 FunFam Probable L-type lectin-domain containing receptor kinase S.5 325 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00208 Phco-Chr6 2079944 2081956 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Phco6g00208 Pkinase 1.5e-50 CL0016