Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00202 ATGGAACTGGCTTTGAGCTTAGGAGACACATCCAAGTCCTTTACTTTTCTCGACAAGCCTGTCAATTTACCCTCCAAGGACCCACCTGGGTTCTGCATACCACCGGGGAAAGGGTTTGATGAGAAAAGAACCGATGCTGAGAAAAGGGGTTCTTCAGATCCACCAGTTCAACTTGATCTTCTTCCTTTCACTCCCGTTCTCAGATCCCAACCTCCTTCCCAGCTTCGAATCCCTTGGCTCGCTGAAGCATGTGGAGCGGCGAGGGTGCTGGATGTAAATCTTTTTCCGTCGGCTGCGGAGGACGGCGATGACGGGACGTCGCTGTCGTCGCCAAGCAGTGCGGTGTCGCCGTTTCAGATGGATTTCAGCATAAGAAACGGTAATGCAGAGTTTGGAGGAAGAAACAAGAGGGAACAACAAGAGGGTGAAGGTACAAGAGTGAGCGATGACGAGGAAAATGGCTCGACTCGGAAGAAACTCAGACTCTCCAAAGAACAATCAGCTTTTCTCGAAGAAAGCTTCAAAGAACACACCACTCTCAATCCAAAGCAGAAACTTGCTTTGGCTAAACAGTTGAATCTCCTTCCTCGTCAAGTGGAGGTTTGGTTTCAGAACAGGAGGGCAAGAACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGCTGTGAGACTCTAACAGAAGAGAATAGAAGGTTGCAGAAGGAGCTTCAAGAACTAAGAGCCTTGAAAACTTCTCAACCATTCTACATGCAGCTTCCAGCCACCACTCTCACCATGTGTCCCTCCTGTGAAAGGGTTGCCACAAATTCCACAACTACTAACCAAACTTCTTCCACTATTAACAATAATGGTTCTCAAATCCCTGTGGAGTTATCTCTAAGCAAGCCCAGAATATTGCCCTTCCCAAATGGGCAGGCCCAGGCAACCCAGGCCCAAGCCCAAACTCAAGCCCATCGGATAGCTTCTTCATGA 984 0.4807 MELALSLGDTSKSFTFLDKPVNLPSKDPPGFCIPPGKGFDEKRTDAEKRGSSDPPVQLDLLPFTPVLRSQPPSQLRIPWLAEACGAARVLDVNLFPSAAEDGDDGTSLSSPSSAVSPFQMDFSIRNGNAEFGGRNKREQQEGEGTRVSDDEENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSTTTNQTSSTINNNGSQIPVELSLSKPRILPFPNGQAQATQAQAQTQAHRIASS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00202 327 Gene3D - 161 211 - -
Phco6g00202 327 SMART HOX_1 155 217 IPR001356 GO:0003677
Phco6g00202 327 MobiDBLite consensus disorder prediction 126 162 - -
Phco6g00202 327 SUPERFAMILY Homeodomain-like 149 214 IPR009057 -
Phco6g00202 327 Coils Coil 219 249 - -
Phco6g00202 327 Pfam Homeobox associated leucine zipper 213 247 IPR003106 GO:0006355|GO:0043565
Phco6g00202 327 CDD bZIP 206 245 - -
Phco6g00202 327 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 53 286 - -
Phco6g00202 327 CDD homeodomain 157 214 IPR001356 GO:0003677
Phco6g00202 327 SMART halz 213 256 IPR003106 GO:0006355|GO:0043565
Phco6g00202 327 MobiDBLite consensus disorder prediction 38 52 - -
Phco6g00202 327 FunFam Homeobox-leucine zipper protein 18 143 218 - -
Phco6g00202 327 ProSiteProfiles 'Homeobox' domain profile. 153 213 IPR001356 GO:0003677
Phco6g00202 327 MobiDBLite consensus disorder prediction 103 119 - -
Phco6g00202 327 Pfam Homeodomain 157 211 IPR001356 GO:0003677
Phco6g00202 327 MobiDBLite consensus disorder prediction 25 57 - -
Phco6g00202 327 ProSitePatterns 'Homeobox' domain signature. 188 211 IPR017970 GO:0000981|GO:0006355
Phco6g00202 327 MobiDBLite consensus disorder prediction 131 162 - -
Phco6g00202 327 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00202 Phco-Chr6 1999096 2000716 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco6g00202 Homeodomain 5.3e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00202 6 1999096 2000716 Phco6g00202 6 1999096 2000716 ECH
Phco2g01649 2 46796930 46797982 Phco6g00202 6 1999096 2000716 PCT