Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00199 ATGTCGTGTTGCGGAGGTGCTGAAGAGGATTTTGGCCTTCCACCTGCAAACCAATACAATACATCACTTGAAAAGGGTAATGCATATGGTGGTGGAGGAGGAGATAGAGGAGAACCAAGGGGAAATATTGTCAAAAGTGGTGCTCCAAAGAAAGAATTGCCAATTGAGATACCTGCTATTTCATTGGATAAGTTAAATCAGTTAACAGACAACTTTGGTACAAATGCTTTGATAGGAGAAGGTTCTTATGGAAGGGTTTATTATGCAAAGATGAGTGATGATATGGATGTTGCAATCAAGAAGTTGGATACTAGTTCTTCTCCAGAACCTGACTCTGATTTTGCAGCACAATTATCAATTGTTTCAAGATTGAAAAATGATCATTTTGTGGAGTTGCTGGGATATTGTTTAGAGGAAAATAACAGAATTTTGGTTTATCAACGTGCGAGTTTGGGTTCTTTGCACGACATATTACATGGAAGAAAAGGAGTGCAAGGTGCTGAACCTGGTCCAGTTTTAAATTGGAGCCAAAGAGTAAAAATTGCATTTGGTGCAGCAAAAGGACTTGAGTTTCTTCATGAAAAGTGTCAGCCTGCTATAGTTCATCGCGATGTTAGATCTAGCAATGTCTTACTCTTCAATGATTATGAATCAAAGATTGCAGATTTCAACTTGTCAAACCAATCTTCTGACACTGCAGCTCGACTCCACTCAACAAGAGTCTTAGGAACATTTGGTTATCATGCTCCAGAGTATGCAATGACAGGACAAATAACCCAAAAAAGTGATGTTTATAGTTTTGGGGTTGTTCTTTTGGAGCTTTTAACAGGAAGAAAGCCTGTTGACCATACAATGCCTAAAGGGCAACAAAGTCTTGTAACTTGGGCAACTCCAAGATTGAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAACTAAATAATGAATACCCACCCAAGGCAATTGCTAAGTTAGCAGCAGTTGCAGCACTTTGTGTGCAATATGAAGCTGATTTCAGGCCAAACATGACAATTGTTGTCAAAGCTCTCCAACCACTTCTCAATTCTAAACCAGCTGGTCCTGAACAAAACCCTAACGCTAACAATATAGCCACACCTAATTAA 1125 0.3929 MSCCGGAEEDFGLPPANQYNTSLEKGNAYGGGGGDRGEPRGNIVKSGAPKKELPIEIPAISLDKLNQLTDNFGTNALIGEGSYGRVYYAKMSDDMDVAIKKLDTSSSPEPDSDFAAQLSIVSRLKNDHFVELLGYCLEENNRILVYQRASLGSLHDILHGRKGVQGAEPGPVLNWSQRVKIAFGAAKGLEFLHEKCQPAIVHRDVRSSNVLLFNDYESKIADFNLSNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNEYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPAGPEQNPNANNIATPN 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00199 374 MobiDBLite consensus disorder prediction 14 48 - -
Phco6g00199 374 SMART tyrkin_6 72 350 IPR020635 GO:0004713|GO:0006468
Phco6g00199 374 ProSiteProfiles Protein kinase domain profile. 72 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00199 374 MobiDBLite consensus disorder prediction 357 374 - -
Phco6g00199 374 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 27 359 - -
Phco6g00199 374 MobiDBLite consensus disorder prediction 355 374 - -
Phco6g00199 374 Gene3D Phosphorylase Kinase; domain 1 46 147 - -
Phco6g00199 374 FunFam PTI1-like tyrosine-protein kinase 3 150 359 - -
Phco6g00199 374 FunFam Pti1 kinase-like protein 48 148 - -
Phco6g00199 374 ProSitePatterns Tyrosine protein kinases specific active-site signature. 200 212 IPR008266 GO:0004672|GO:0006468
Phco6g00199 374 SUPERFAMILY Protein kinase-like (PK-like) 53 350 IPR011009 -
Phco6g00199 374 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Phco6g00199 374 Gene3D Transferase(Phosphotransferase) domain 1 150 370 - -
Phco6g00199 374 Pfam Protein tyrosine and serine/threonine kinase 76 350 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00199 Phco-Chr6 1969919 1972292 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Phco6g00199 PK_Tyr_Ser-Thr 1.9e-45 CL0016