Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00182 ATGGAACTTGCTATAGTACCAGTCGATTCAAGTTTCAGAGATTATCAAACCCTATATGAAGAGTGGTTCAATTATGCAGATTCAGATGGGGATGGTCGTTTTACGGGGCATGAAGCCATCAAGTTTTTTACTATGTCAAACTTGTCACGACAAGAACTGAAACAGGTACCTTCTTCTTCGGTGACATCAATAGTAGATGGTTTGAAGAGACTTTATCTTCAAAAGTTGAAACCTTTAGAAGTTGCTTATCGATATAATGATTTTGTATCTCCTTTATTGTCTGGACCTGATGAAAGAAGCATTCCTGGCAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACTACATTTGGCACATCATTTTTGTCCAAATTTGAGTGTTCTCAAATGCCTCATCCTTTATTGGAGCACATTACATTTGTTGATAGTCCTGGAGTCTTGTCTGGAGAAAAACAAAGGACACACAGACAATATGACTTTACTGGTGTAACATCGTGGTTTGCTGCTAAATGTGATTTAATACTCCTTTTGTTTGATCCTCACAAACTTGATGTTAGCGATGAGTTTAAGCGTGTGATATCATCTCTACGAGGACATGATGACAAAATTCGAGTGGTCTTAAACAAAGCAGACCAAGTTGATCCTCAACAACTAATGAGAATATATGGTGCATTAATGTGGTCACTTGGGAAGGTATTGAATGTTCCTGAAGTCATGCGTGTATATATTGGATCTTTCAACGATAAGTTTATGCATGATTCTATTAGTGGTCAACTTGGTGATGAATTGTTTCAAAAAGAACAAGATGATCTTCTTTCAGATCTGAAAGATATACCAAAGAAGGCTTGTGATCGTAAAATCAATGAATTTGTAAAAAGAGCTAGGGCTGTTGTGATACATGCTTACATTATCAGTCATCTGAAGAAGCAAATGCCCACCATGATAGGAAAAGCTAAAGCTCAACAAAAGCTCATTGATAATTTGGATGTTGAATTTGGAAAGGTACAAAGGGAGTTTCATCTACCAGCTGGTGATTTTCCAAATGTTGAACAATTCAGAGAGACTTTGAGTGGTTACAACATTGATAGGTTTGAGAAATTGAATAAAAAAATGATACAAACAGTGGATGATATGCTTGCCTATGATATTCCTAACCTATTGAAGGCTTTCAGAAATCCCTATGTTTCTTCCTTCGATCTCATCCTATACTCACCGGATAGTCCTTACTTGGGCCACCGTCCACGGCAGCTCCGGCAACCACCTTTGGTTCCCTTGCTTTCTCTGTCTTTGTCTCAGGTTTTATCAAGAATGAAATTACCTACAACTAATGTGGATCTTGGGCCTAAGAAGATTGAACATGAGAAAGAGGAAGGTCGCTTGTTACATTGTGATTTTTGTGACATAGAAGTAGTTCACAATCTGGCTCAAATGTTCATGCCAGGACTAGCCTGTGCCTGTGTTGATAACACAACAGGAGATCCCTTCAGTACCCCTGGTTTTGTGGCTGTTGATATGAGAAAGGAGATGATAGAATTTGTCACCCAAAAGAGTGAACTATTTGTTGCTGAGTCTATTATCTCTGAGGGTGGTCCTGATGGTGAAGCTTTGGAACACCCTTTTGATATTATTTCTTATTTTGTTGATGAGTTTGTTAATTCAAAGAGGAATTTGTGGAGCCAGTTTTCAGGGTGGTTGCTAAGTGATAAGAGAGAGGACAAAATAGATGATTTTGTTCAGGAGATGGAAGTAAATGGTTTTTGGCCACTGGATAGAAGAGAAGCACTTGCAAAAGATTTGCTCAAGAATGTTGACTTCAAGAGCTCATTTCATTGCAGTATGAGTTTTAACTCTGCCGAAGATCTTGCCAACCATGTTGATGCATGCGACTTCAGGTCCGTGATATGCCAAAATGAGGGGTGCAATATTAGAGTCAGTGCTGGTCAATTGAAAGAGCATGATTCAACTTGTGATTTCAAGATAGTTCCATGTGAACAGAAGTGCACAGCTAACATCTTCAGACGTGAGATGGATAGACACTGCCTAACTGTTTGTCCCCTAAAGCTTGTGAATTGCCCTTTCTCTGCCATAGGCTGTAGATCTACAACTGCACAAAGTATGATTAGAAAACATTGTTCAGATGATATTGAGTCTCACTTATTCCTGATTCTTAAAGGCATCCACCAGCCAGCGTCAAGCGAAGATCTTCAAAGACGTGTGGAGCAAATTGTACAGACATCATCAAGAAGCAAATTAGCAGAGGCTAGGGATGTGAGATCTTTTAAAAGGATTGTCAAGGACCTTGAAGTTAAGCTAGGGTCTCTAGAAGTGAGTGCCGAAGAGAAAACTAGTACAGAAGAAGTTGCCAAAAATGAAGATCGAGAAGAAAATAGAACTTCTGCAGTAAATGGTGTCAATAAAGAGGATGTGAACACAGAAAATGAAAAGCAAGGGTAG 2463 0.3906 MELAIVPVDSSFRDYQTLYEEWFNYADSDGDGRFTGHEAIKFFTMSNLSRQELKQVPSSSVTSIVDGLKRLYLQKLKPLEVAYRYNDFVSPLLSGPDERSIPGNTVAVQADMPFSGLTTFGTSFLSKFECSQMPHPLLEHITFVDSPGVLSGEKQRTHRQYDFTGVTSWFAAKCDLILLLFDPHKLDVSDEFKRVISSLRGHDDKIRVVLNKADQVDPQQLMRIYGALMWSLGKVLNVPEVMRVYIGSFNDKFMHDSISGQLGDELFQKEQDDLLSDLKDIPKKACDRKINEFVKRARAVVIHAYIISHLKKQMPTMIGKAKAQQKLIDNLDVEFGKVQREFHLPAGDFPNVEQFRETLSGYNIDRFEKLNKKMIQTVDDMLAYDIPNLLKAFRNPYVSSFDLILYSPDSPYLGHRPRQLRQPPLVPLLSLSLSQVLSRMKLPTTNVDLGPKKIEHEKEEGRLLHCDFCDIEVVHNLAQMFMPGLACACVDNTTGDPFSTPGFVAVDMRKEMIEFVTQKSELFVAESIISEGGPDGEALEHPFDIISYFVDEFVNSKRNLWSQFSGWLLSDKREDKIDDFVQEMEVNGFWPLDRREALAKDLLKNVDFKSSFHCSMSFNSAEDLANHVDACDFRSVICQNEGCNIRVSAGQLKEHDSTCDFKIVPCEQKCTANIFRREMDRHCLTVCPLKLVNCPFSAIGCRSTTAQSMIRKHCSDDIESHLFLILKGIHQPASSEDLQRRVEQIVQTSSRSKLAEARDVRSFKRIVKDLEVKLGSLEVSAEEKTSTEEVAKNEDREENRTSAVNGVNKEDVNTENEKQG 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00182 820 Pfam Domain of unknown function (DUF5600) 288 389 IPR040990 -
Phco6g00182 820 Gene3D - 10 67 - -
Phco6g00182 820 Gene3D - 94 281 IPR027417 -
Phco6g00182 820 ProSiteProfiles EF-hand calcium-binding domain profile. 14 49 IPR002048 GO:0005509
Phco6g00182 820 SUPERFAMILY EF-hand 16 56 IPR011992 -
Phco6g00182 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 320 IPR027417 -
Phco6g00182 820 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 1 283 IPR030381 GO:0005525
Phco6g00182 820 MobiDBLite consensus disorder prediction 778 804 - -
Phco6g00182 820 PANTHER EH DOMAIN 15 56 - -
Phco6g00182 820 CDD EHD 92 296 - -
Phco6g00182 820 Gene3D - 282 389 - -
Phco6g00182 820 Pfam N-terminal EH-domain containing protein 67 97 IPR031692 -
Phco6g00182 820 MobiDBLite consensus disorder prediction 778 820 - -
Phco6g00182 820 ProSiteProfiles Zinc finger TRAF-type profile. 655 702 IPR001293 GO:0008270
Phco6g00182 820 SUPERFAMILY TRAF domain-like 622 666 - -
Phco6g00182 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 719 IPR013083 -
Phco6g00182 820 Pfam TRAF-type zinc finger 655 713 IPR001293 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00182 Phco-Chr6 1773975 1785167 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00182 6 1773975 1785167 Phco6g00182 6 1773975 1785167 ECH
Phco2g02297 2 53539570 53545984 Phco6g00182 6 1773975 1785167 PCT