Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00145 ATGGGAAACAGCTGTGTTGGATCGAGAACCTGTACTGCTAATAACGGAACTCGTGGCTCTTCTGTTCCTAGTCCATACTGGTGGTGTTGTGGATACAAAGATGGTTCTCATGCCTGCAAATGTGACAAAACGAACACAAAAGACACAGAAACTATTCAAGACATGCCTCCACAGATAGTGAGAATTGAGAGTGATGAGGTGAAGCCTCCTCATCAATACAAAGAGGACAAGCCACCTTCGGAACAAACAAGACCGCAGCCCAGGCCACAGCCCAGGCCACACAATGCGAAGAAGCCGGCAAGTGCAGGCCTCAAAGCAGATTCTGTTTTGCTAAGGAAAACCGGTAACCTTAAGGAGTGTTACAATTTGGGACAAAAGCTTGGACAAGGCCAGTTTGGAACTACTTTCCTTTGTGTGGAGAAAGCCACTGGGAAAGAGTATGCATGCAAGTCCATATTGAAGAGGAAGCTGATGACAGAGGAGGATGTGGAGGATGTAAGGAGGGAAATTCAGATAATGCACCACTTGGCAGGGAGTGCTAATGTGATCTCAATCAAGGAGGCTTTTGAGGATGCTGTTTCAGTTCATGTTGTTATGGAGCTGTGTGCTGGGGGTGAGCTGTTTGATAGGATTGTGGAAAGAGGGCATTACAGTGAGAGAAAGGCAGCCAAGCTTGCAAGAACAATAGTTGGTGTGATTGAGTCTTGCCACTCTCTTGGAGTGATGCATAGAGATCTTAAGCCCGAAAATTTTCTCTTTGTTAATCAGCAAGAAGAATCCCCTCTCAAGGCAATAGATTTTGGACTTTCTGCTTTTTTCAAACCAGGTGAAATTTTCAGTGACGTAGTAGGAAGTCCCTATTATGTAGCCCCTGAAGTTCTACGCAAGCGTTATGGCCCCGAAGCAGATGTATGGAGTGCTGGTGTCATTATATACATTCTCTTAAGTGGGGTGCCTCCATTTTGGGGAGAAACGGAACAAGAGATATTCGACGCAATTTTGCGTTTTCAACTCGATTTCTCATCGGATCCATGGCCTTCCATATCAGCAAGTGCAAAAGACTTGGTTAGGAAGATGCTTGTCAGAGACCCTAGTAAACGGATAACAGCTTTTGATGTTCTTCGTCACCCTTGGATTCAAGTTGATGGAGAAGCTCCTGACAAGCCCCTTGATTCTGCAGTTTTAAGTCGCCTAAAGCAGTTTTATGCAATGAACAAACTCAAGAAAATGGCTCTCAGAGTTATAGCCGAGAATCTCTCTGAAGAAGAAATTGCAGGGTTGAAAGAAATGTTTAAGATGATAGACGCAGACAATAGTGGTCAAATTACTTTTGAAGAACTCAAGATTGGACTGAAAAAGTTTGGTGCTAATCTCAATGAATCTGAAATTTACGACCTTATGCAAGCAGCAGATGTTGATAACAGTGGCACAATTGACTATGGAGAATTCATAGCTGCAACATTGCATCTAAACAAGGTTGAAAGAGAAGATCATTTAGTCGCAGCTTTTGCTTATTTTGATAAAGATGGAAGTGGCTACATCACTCAAGACGAGCTTCAACAAGCTTGCGAAGAATTTGGCATTGGAGATGTTCGCTTGGAGGAAATGATGCGAGAAGCTGATCAAGATAACGATGGACGAATAGACTACAATGAATTTGTGACTATGATGCAGAAAGGTAATGCAGAGATGGGTAAAAGGGGTCGAAAGGGTAGCACTAGTTTTAGAATTGGATTTAGGGAGGCACTACCGGTGTGTTAA 1761 0.4333 MGNSCVGSRTCTANNGTRGSSVPSPYWWCCGYKDGSHACKCDKTNTKDTETIQDMPPQIVRIESDEVKPPHQYKEDKPPSEQTRPQPRPQPRPHNAKKPASAGLKADSVLLRKTGNLKECYNLGQKLGQGQFGTTFLCVEKATGKEYACKSILKRKLMTEEDVEDVRREIQIMHHLAGSANVISIKEAFEDAVSVHVVMELCAGGELFDRIVERGHYSERKAAKLARTIVGVIESCHSLGVMHRDLKPENFLFVNQQEESPLKAIDFGLSAFFKPGEIFSDVVGSPYYVAPEVLRKRYGPEADVWSAGVIIYILLSGVPPFWGETEQEIFDAILRFQLDFSSDPWPSISASAKDLVRKMLVRDPSKRITAFDVLRHPWIQVDGEAPDKPLDSAVLSRLKQFYAMNKLKKMALRVIAENLSEEEIAGLKEMFKMIDADNSGQITFEELKIGLKKFGANLNESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKVEREDHLVAAFAYFDKDGSGYITQDELQQACEEFGIGDVRLEEMMREADQDNDGRIDYNEFVTMMQKGNAEMGKRGRKGSTSFRIGFREALPVC 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00145 586 FunFam Calcium-dependent protein kinase SK5 207 391 - -
Phco6g00145 586 MobiDBLite consensus disorder prediction 1 20 - -
Phco6g00145 586 Pfam Protein kinase domain 121 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00145 586 SUPERFAMILY EF-hand 418 559 IPR011992 -
Phco6g00145 586 SMART serkin_6 121 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00145 586 MobiDBLite consensus disorder prediction 64 82 - -
Phco6g00145 586 PANTHER SERINE/THREONINE-PROTEIN KINASE 112 553 - -
Phco6g00145 586 Pfam EF-hand domain pair 499 558 IPR002048 GO:0005509
Phco6g00145 586 Pfam EF-hand domain pair 427 487 IPR002048 GO:0005509
Phco6g00145 586 Gene3D Transferase(Phosphotransferase) domain 1 207 403 - -
Phco6g00145 586 CDD EFh 498 558 IPR002048 GO:0005509
Phco6g00145 586 ProSitePatterns EF-hand calcium-binding domain. 541 553 IPR018247 -
Phco6g00145 586 ProSiteProfiles EF-hand calcium-binding domain profile. 494 529 IPR002048 GO:0005509
Phco6g00145 586 CDD STKc_CAMK 121 378 - -
Phco6g00145 586 FunFam Calcium-dependent protein kinase 1 387 561 - -
Phco6g00145 586 ProSitePatterns EF-hand calcium-binding domain. 435 447 IPR018247 -
Phco6g00145 586 ProSitePatterns EF-hand calcium-binding domain. 471 483 IPR018247 -
Phco6g00145 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Phco6g00145 586 ProSiteProfiles Protein kinase domain profile. 121 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00145 586 MobiDBLite consensus disorder prediction 50 105 - -
Phco6g00145 586 ProSiteProfiles EF-hand calcium-binding domain profile. 422 457 IPR002048 GO:0005509
Phco6g00145 586 ProSiteProfiles EF-hand calcium-binding domain profile. 532 563 IPR002048 GO:0005509
Phco6g00145 586 SMART efh_1 532 560 IPR002048 GO:0005509
Phco6g00145 586 SMART efh_1 426 454 IPR002048 GO:0005509
Phco6g00145 586 SMART efh_1 498 526 IPR002048 GO:0005509
Phco6g00145 586 SMART efh_1 462 490 IPR002048 GO:0005509
Phco6g00145 586 ProSitePatterns Protein kinases ATP-binding region signature. 127 154 IPR017441 GO:0005524
Phco6g00145 586 ProSitePatterns EF-hand calcium-binding domain. 507 519 IPR018247 -
Phco6g00145 586 Gene3D Phosphorylase Kinase; domain 1 123 206 - -
Phco6g00145 586 FunFam Calcium-dependent protein kinase 1 123 206 - -
Phco6g00145 586 ProSiteProfiles EF-hand calcium-binding domain profile. 458 493 IPR002048 GO:0005509
Phco6g00145 586 CDD EFh 427 486 IPR002048 GO:0005509
Phco6g00145 586 SUPERFAMILY Protein kinase-like (PK-like) 119 380 IPR011009 -
Phco6g00145 586 Gene3D - 404 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00145 Phco-Chr6 1357572 1361863 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Phco6g00145 Pkinase 1.2e-72 CL0016