Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00135 ATGGATTCCAAAAACATGGCAAAGAAGAACGTGAAAAAGACGAGAGGTCGTCAGAAGATTGAGATAAAAAAGATGAGCAACGAGCACAACCTTCGTGTGACATTCTCCAAGCGTCGTACTGGGATTTTCAAGAAAGCAAGTGAGCTTGCTACCCTCTGTGGTGTGGACATCGCTCTGATCATGTTTTCACCAAGTAATCAGGTGTTCTCTTTCGGAAGCCCTAATGTGGATCCTGTTATCCAACGCTACACGGCGCAAGGTCCACCTCCCCTCCTCACTCTGGACCTCAATGAGGCTCACAGCACTGTGGACGAGGGAGAGCTCCATGCTCAACTCAACAACTTGTCTGACCAGATGGCTGCGGAAAAGAAGCATGAAGAGGCTCTCAAACGTCTGATGAAGGATGTGGAGGAACACTCTTGGTGCGCCATGCCGATGGAAAGCATGAATGATACACAACTCGAGAAGTACAAGAAGATGTTGGAGGATCTGAAGGAACGTGTCAATGAAAAACGTGAGAAACTCCTCCTTCAGAGCACTTTTTCTTATAACTCACAAACTCAGTTTTTCACAGGTGGAAACTCCTTTTCCAGTGTTAATAACACTGAGACTATACATCCACCATTGTCGTTATAG 636 0.4607 MDSKNMAKKNVKKTRGRQKIEIKKMSNEHNLRVTFSKRRTGIFKKASELATLCGVDIALIMFSPSNQVFSFGSPNVDPVIQRYTAQGPPPLLTLDLNEAHSTVDEGELHAQLNNLSDQMAAEKKHEEALKRLMKDVEEHSWCAMPMESMNDTQLEKYKKMLEDLKERVNEKREKLLLQSTFSYNSQTQFFTGGNSFSSVNNTETIHPPLSL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00135 211 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Phco6g00135 211 Coils Coil 112 132 - -
Phco6g00135 211 CDD MADS_MEF2_like 16 83 IPR033896 GO:0000977|GO:0045944
Phco6g00135 211 SUPERFAMILY SRF-like 16 92 IPR036879 GO:0003677|GO:0046983
Phco6g00135 211 Gene3D - 27 89 IPR036879 GO:0003677|GO:0046983
Phco6g00135 211 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Phco6g00135 211 PANTHER MADS BOX PROTEIN 17 171 - -
Phco6g00135 211 FunFam Agamous-like MADS-box protein AGL62 27 91 - -
Phco6g00135 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 71 IPR002100 GO:0003677|GO:0046983
Phco6g00135 211 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Phco6g00135 211 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Phco6g00135 211 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Phco6g00135 211 Coils Coil 154 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00135 Phco-Chr6 1292096 1292731 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco6g00135 SRF-TF 1.2e-22 No_clan