Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00132 ATGGCGATGCAAACTGCTTACCTGAAAGAACACGAAGGAATTGCTCACAATTCTGTTGGACAATTGTCATCTGTAACTTCAGCTCCATGGTTGAATGGCTTAGGATCTCAACCAGTCTATGGGGATTATAGTGGCCAAAGCAAGCCCTTTTCTTTGGAGTTTTCCAACTACGTCGACCAATTTGCTGGTGATGATTGTAAAATGTTGGGCGATGCCCAAAATCCTCAGGCAACCTTAGCACCGCAGTCATCAGTTGCTGAGCCCCCCAACCATTTCGAGATAGGGTTTAATCAGCCTATGATCTGTGCACCATATCCCTGTATGGATCAGTTTTGTGGGCTCGTCCCAGCTTATGGACCTCAAATTCCGGGACGTATAATGCTTCCGCTTAACATGGCATCTGATGATGGACCAACCTACGTTAATGCTAAGCAGTACCATGGAATCATCAGACGCAGGCAGTCACGCGCTAAGGCAGTTCTTGAGAATAAACTGATTAAACGTCGCAAGCCTTACATGCATGAATCACGCCATCTACATGCAATGAGGAGACCAAGAGGAAATGGTGGTCGCTTCTTGAACACAAAAAACTCCAATAATGAAAATGGTGGAAATGATCTTGAAGGGAATCAAATGGGTGGCCTACAATTTCTGTCTAGTGCCTCTCAGAGTTCTGAAATGATGCAATCTGATGTTGGAATGCATTCACCAATGGAGACAGATCAATGCAGTCCAAACATGTCTAGTTCAGAAGTGAATAGCATGTATTCGCGGGAAGGTTTCGATGGCTTTTCTGTCAATCCTCTTGGATCTTCTGTCCATCCTCTTGGATCTTCTGTCCATCCTATTGGGTCTTCTGTCAATCCTCTTGGATCTTCTGTTCATCCTCTTGGATCTTCTGTCCATTCTATAGCAGACATGATAGGAAACTTGGTTCTATCTGATTTAGGCAAACCATTCTTGGCTAAGCTTAGGCAACTCATCCTTGGCTCACCACATTAG 1002 0.4451 MAMQTAYLKEHEGIAHNSVGQLSSVTSAPWLNGLGSQPVYGDYSGQSKPFSLEFSNYVDQFAGDDCKMLGDAQNPQATLAPQSSVAEPPNHFEIGFNQPMICAPYPCMDQFCGLVPAYGPQIPGRIMLPLNMASDDGPTYVNAKQYHGIIRRRQSRAKAVLENKLIKRRKPYMHESRHLHAMRRPRGNGGRFLNTKNSNNENGGNDLEGNQMGGLQFLSSASQSSEMMQSDVGMHSPMETDQCSPNMSSSEVNSMYSREGFDGFSVNPLGSSVHPLGSSVHPIGSSVNPLGSSVHPLGSSVHSIADMIGNLVLSDLGKPFLAKLRQLILGSPH 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00132 333 MobiDBLite consensus disorder prediction 191 208 - -
Phco6g00132 333 SMART cbf3 134 195 IPR001289 GO:0003700|GO:0006355
Phco6g00132 333 ProSiteProfiles NF-YA/HAP2 family profile. 135 195 IPR001289 GO:0003700|GO:0006355
Phco6g00132 333 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 138 192 IPR001289 GO:0003700|GO:0006355
Phco6g00132 333 PRINTS CCAAT-binding transcription factor subunit B signature 138 160 IPR001289 GO:0003700|GO:0006355
Phco6g00132 333 PRINTS CCAAT-binding transcription factor subunit B signature 169 192 IPR001289 GO:0003700|GO:0006355
Phco6g00132 333 MobiDBLite consensus disorder prediction 183 208 - -
Phco6g00132 333 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 49 259 IPR001289 GO:0003700|GO:0006355
Phco6g00132 333 Gene3D - 135 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00132 Phco-Chr6 1269317 1273053 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Phco6g00132 CBFB_NFYA 5.4e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02265 2 53279076 53283478 Phco6g00132 6 1269317 1273053 PCT