Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00125 ATGATGGAGAGTGGATGGAAGCCTGAGGTTGAGATATCACCAAATTGTCCTAGGTGTGGTTCTTCCAACACCAAGTTCTGCTACTACAATAACTACAGCTTAACTCAACCAAGGTACTTTTGCAAAGGGTGCAGAAGGTACTGGACCAAAGGAGGCTCTCTCCGCAATGTGCCTGTTGGTGGTGGCTGCAGGAAAAACAGAAGAGGTAACAAAACTTTGTTGAGACAATCCATTGATTGTTTCACTTTCAAAAGTTCATCATCACCTTGTGGCAATGCCACAGATCATAATAATAAGCCTGTTGGGCATTCTTATGATCCTAGAATAAGGACTTCTGCAGCTTCTAGCTCCTCCCCAGTGGTGAGTGATGGACCAAATATTGATCTTGCACTAGTGTATGCAAGTTTCCTCAACCAAAAGCCCAGTTCTGAATCTGGGATTGAGAGCAATAATCCAGATCAAGTTCAAACAGCTTTTGATCCTTCTCTAGAGAATAATTCAAGGCTATCGAACACAGATGCTTCTGGTCCAAGTACTTTGCCTGAAGAAATTGGTCTTACTGGGTGCTTGGATCTTCCTGAGCAACCATCCACACATTCTGGTGAGGCTAATAATAATAGCCAAATGTGCTATGGTGAGTTCAACACTATGCAGACTATTCAAAAAGATGGAATTGAGCAGTGTAGTAGTCATGGTGGTGGTATGAATTTTGAGCTGCCACCATTACCGGGTGAAGTGGAAGCCTCACATGATCATCATATGATGTGGTCAAATTCTGAGATGATGATAAATCATCATGCATTTCAAGCCACACAACCACCACTTCTTGGACCTGAAGTTCACGATGCAGACTTGTTAATAGGTAATTGGAGCCCCTTTGATTTGCCTTGA 891 0.4276 MMESGWKPEVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNKTLLRQSIDCFTFKSSSSPCGNATDHNNKPVGHSYDPRIRTSAASSSSPVVSDGPNIDLALVYASFLNQKPSSESGIESNNPDQVQTAFDPSLENNSRLSNTDASGPSTLPEEIGLTGCLDLPEQPSTHSGEANNNSQMCYGEFNTMQTIQKDGIEQCSSHGGGMNFELPPLPGEVEASHDHHMMWSNSEMMINHHAFQATQPPLLGPEVHDADLLIGNWSPFDLP 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00125 296 MobiDBLite consensus disorder prediction 142 204 - -
Phco6g00125 296 Pfam Dof domain, zinc finger 15 68 IPR003851 GO:0003677|GO:0006355
Phco6g00125 296 MobiDBLite consensus disorder prediction 142 178 - -
Phco6g00125 296 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
Phco6g00125 296 MobiDBLite consensus disorder prediction 89 122 - -
Phco6g00125 296 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
Phco6g00125 296 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 194 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00125 Phco-Chr6 1201752 1202642 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phco6g00125 zf-Dof 4.5e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00125 6 1201752 1202642 Phco6g00125 6 1201752 1202642 ECH
Phco2g02257 2 53231182 53231964 Phco6g00125 6 1201752 1202642 PCT