LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco6g00122	ATGGCGACATATTTTCAAAGTAACCCCAAAATTCAGTCAGGTGCTGACGGCCTTCAAACTCTCGTACTAATGAACCCTGACTATGTCCAATACTCCGACGCGCCGCCGCCACCCCACGGCGGAAATCACCTGTTTCTCAACTCCGCCGCCACCGTTGCCAACAACACCTCCCTACTGAACCTCCCCCATGCGCCGTCCCCTCACACTCAGCAATTCGTCGGCGTGCCGCTCTCCGCCACAGCCCAGGAGCCGCCGCCGCCCATGCCCCACGACGTCTCCGCCCTGCATGGCTTCCTGCCGCGCATGCAGTACAACCTTTGGAACACAATTGACCCCAGCACGGCGGCGCGTGAGCCCCCACGCGCCTCTCAGGGACTGTCACTTAGCCTGCACGGTGAGGAGGTGCGCCCATCGTCGTCCTCTGCTTCCGGGGCCTCCAACGGCGGCGGTGTGGTGGGGATTCAGAGTGTGCTCTTGAGTTCCAAGTACTTGAAGGCCACGCAAGAACTTCTGGACGAGGTTGTGAATGTTAACAGCGGAATTAAGGTTGAACAAGCGAAGAAGAGCTTCGAGAAAACTAAGGTGGTTGGAGAATCATCAACCGCCGCTAGTGGTGACGGCGGAGAGGGAAGTGGGAAACGTAGCTCTGAATTGTCAACTACAGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTAATCAGCATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACAACCAGATGCAGATTGTGACATCCTCCTTTGAGCAAGTTGCAGGGATTGGTTCTGCGAGAACGTACACTGCACTTGCATTGCAAACAATTTCAAAGCAATTTCGATGTTTGAAGGATGCAATAACAGGTCAAATCAGAGCTGCAAATAAGAGTTTGGGAGAAGAGGATTGTTTTGGGGCTAAAGTTGAAGGTTCTAGGCTCAAATATGTGGACCATCATCTACGGCAACAGAGAGCTATTCAACAGTTAGGAATGATCCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCGGTTTCTGTCTTGCGTGCTTGGCTCTTTGAACACTTTCTCCACCCCTACCCCAAGGACTCCGACAAACACATGCTTGCAAAACAAACAGGGCTTACCAGGAGTCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAGATGAAAGAACATGAACTAAATGGGTCTGAGGAGAAATCAAGCAAGAGTGGTGAAGATCCTGCAATGAAAAATTCAACTCCACGAGAGAAACGTCCAACCTCTGAAATTGAATCTAAAAGTTTTAGTTCTAAACAAGATGTTTCTAAAAGTCAGAACAATTCAATAGTTTCAACTTCACCATCAACATCACCTATAGGGGGAAGAAATGTTAAGAATCAATCAGGATTCAGTTTCATTGGGTCATCAACACAGGGAAGCCCCAAGAAACCAAGGAACCATGAAATTCTACCCTCTCCAAATCGTGCTTCTTCAGTCAACATGGACGTTAAAATGAATGAGGGCAACAATGAACAACAAGTTTCGATGGATGAGAGACAGAGTAGGGATGGGTACTCTTTCATGGGGAGCCAAACAAATTTCACTAGTGGATTTGGACAATACCCAATGGAGGAAATTGGTAGGTTTGATGCTGAGCAATTCACACCAAGGTATTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTCCTCATTGTGACACATTGTCAGGAACACATCAAACTTTTCTCCCTAACCAAAACATTCAGCTAGGAAGAGGGTTGGACATTGGTCAACCAAATCAATTTGGTGTCTTAAACAATTCCACTTCTCACTCTTCAGCAGCATATGAGAGTATGAACATGCAGAACCCAAAGAGGTTTGCAGCACAATTGGTACTAGACTTTGTGGCCTAA	1956	0.4785	MATYFQSNPKIQSGADGLQTLVLMNPDYVQYSDAPPPPHGGNHLFLNSAATVANNTSLLNLPHAPSPHTQQFVGVPLSATAQEPPPPMPHDVSALHGFLPRMQYNLWNTIDPSTAAREPPRASQGLSLSLHGEEVRPSSSSASGASNGGGVVGIQSVLLSSKYLKATQELLDEVVNVNSGIKVEQAKKSFEKTKVVGESSTAASGDGGEGSGKRSSELSTTERQEIQMKKAKLISMLDEVEQRYRQYHNQMQIVTSSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEDCFGAKVEGSRLKYVDHHLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEHELNGSEEKSSKSGEDPAMKNSTPREKRPTSEIESKSFSSKQDVSKSQNNSIVSTSPSTSPIGGRNVKNQSGFSFIGSSTQGSPKKPRNHEILPSPNRASSVNMDVKMNEGNNEQQVSMDERQSRDGYSFMGSQTNFTSGFGQYPMEEIGRFDAEQFTPRYSGNGVSLTLGLPHCDTLSGTHQTFLPNQNIQLGRGLDIGQPNQFGVLNNSTSHSSAAYESMNMQNPKRFAAQLVLDFVA	651

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco6g00122	651	Pfam	Homeobox KN domain	356	395	IPR008422	GO:0003677\|GO:0006355
	Phco6g00122	651	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	81	425	-	-
	Phco6g00122	651	CDD	homeodomain	339	400	IPR001356	GO:0003677
	Phco6g00122	651	MobiDBLite	consensus disorder prediction	133	147	-	-
	Phco6g00122	651	ProSiteProfiles	'Homeobox' domain profile.	336	399	IPR001356	GO:0003677
	Phco6g00122	651	Pfam	Associated with HOX	157	290	IPR006563	-
	Phco6g00122	651	SUPERFAMILY	Homeodomain-like	340	406	IPR009057	-
	Phco6g00122	651	MobiDBLite	consensus disorder prediction	112	147	-	-
	Phco6g00122	651	SMART	prehox3	152	291	IPR006563	-
	Phco6g00122	651	MobiDBLite	consensus disorder prediction	194	224	-	-
	Phco6g00122	651	Coils	Coil	223	250	-	-
	Phco6g00122	651	FunFam	BEL1-like homeodomain protein 9	342	404	-	-
	Phco6g00122	651	MobiDBLite	consensus disorder prediction	411	445	-	-
	Phco6g00122	651	MobiDBLite	consensus disorder prediction	411	514	-	-
	Phco6g00122	651	Gene3D	-	335	412	-	-
	Phco6g00122	651	MobiDBLite	consensus disorder prediction	446	497	-	-
	Phco6g00122	651	SMART	HOX_1	339	403	IPR001356	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco6g00122	Phco-Chr6	1160722	1163496	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-BELL	Phco6g00122		POX	4.6e-50	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco6g00122	6	1160722	1163496	Phco6g00122	6	1160722	1163496	ECH
	Phco2g02253	2	53197500	53200340	Phco6g00122	6	1160722	1163496	PCT