Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00117 ATGACAGTGGCGCTGACAAACTCTTTGCCGTTGCTCCTTTTCTCGTTGTGGACGGTAGTGTTAACCGAAACGGACCCGAACGATGTGGGGATTCTGAACAGTTTTCGAAGAGGTTTGAAGAACAAAGAGCTCTTACCGTGGCCGGAAGAAGGCGGAGACCCGTGTGGGAATCCTCCATGGAAGTACATATTCTGCAATGGCAACAGAGTTTCTCAGATTCAGACCAAGAACTTGGGTCTGGTGGGCCCGCTACCCTCCAACTTCAACAAGCTTTCCATGTTGGAGAATCTGGGTATGCAGAACAACAACCTCAACGGGCCCTTACCCTCCTTCAATGGCTTGTCAAACTTGAAATACGCGTTTCTCAACCGCAACGGCTTTGAATCCATTCCCGGGGATTTTTTCCGAGGGCTTCGGAGTCTCCAGGTGTTGGCGTTGGATTACAATAATCTCAATGCCTCTTCTGGTGGCTGGGTGCTTCCTCAAACTTTGGAAGATTCGGCACAGTTGAGGAACTTTTCTTGCATGAGCTGCAACTTGGTGGGTCCCATTTCTGCGTTTCTCGGCTCTTTGTCTTCGCTGGAGGTGCTGCAGCTCTCCGGGAATAGCTTGACCGGGGAGATTCCGGCGGCTTTGAACGCCGTTCCGGCGTTGCAGATTCTCTGGCTAAACAACCAGCGTGGTGACGGACTTACTGGGAAAATCGAAGTTGTTGCGAGCATGATTTCATTGACGAGTTTGTGGCTTCACGGGAATAAGTTTAGCGGGAGTATTCCGGTGAACATTGGGGATTTGGTTTCACTGAGGGATTTGGATCTTAATGGGAATGAGTTTGTTGGGTTGATTCCGCGTGGTTTGAGTGGGATGAAGTTGGAGCGGTTGGATTTGAATAATAACCACTTCATGGGTCCGATCCCTGATTTTGCTGCGGATAAAGTGAGTTTTGAAAGCAATAATTTTTGCTTATCGAAGCCTGGGGTTATGTGTGCGTTTGAGGTGATGGCGCTGTTGGATTTTCTTGGGGAGTTGGGTTACCCTCAGATTTTGGTTGATTCGTGGAGTGGGAATAATCCGTGTGATGGGCCATGGTTGGGGATAAAGTGCAATGGGGATGGAAAGGTGGAAATGATTATTTTGAGTAACTTTAATCTTAGTGGTACTTTGAGTCCTTCTGTTGCCAAGTTGGATTCTCTTGTTGGAATAAGGTTGGGAGGTAATGATATCAGTGGTAGGATACCCAGTAATTGGACTAGTTTGAGATCATTGACATTGTTGGATCTGAGTGGTAATAACATATCTCTTCCCTTGCCGAGTTTTGGGAAAGGGGTGAAACTTGTGATTGATGGGAATCCTCAGTTAGGTGGTGCCCCAGAAGTTTCTCTTTCTCCACCAGGTTCTGGTTCTGGTCCTAGTTCTGGTTCTGGTAAGGTTGAACCTCCTTCATCTGATAAGCGTAATCCTAATCCATCTGAAGGCTCTAGTCCCAATCCAAAGTCTGGCAGTGTTTCTCTTGAGTCAAATAATTCCAGAGGGAAAAGCTTGGTTCTAATTGTGGCTCCTATTGCAGGTGTTGCAGCTGCGGCTTTTGTTCTCATTCCGCTTTATGTGTATTGTTTCAGGAAGAGAAAGGGTGTCTCTGACAGAGCAGGGTCTCTGGTGATTCACCCCGGAGATCCTTCAGACTCGAACAATGCGCTGAAGGTTGTAATTGCTAACAACAACAATGGGAGTGTTTCAACAGTGACTGGCGCTGGGTCTGGGACTCTAAATGGAAGTGGGGAGTCTCATGTCATTGAATCTGGAAACCTTGTGATATCGGTTCAGGTCCTTCGAAATGTGACCAAGAATTTTGCACGGGAGAATGAGCTTGGACGCGGTGGATTTGGAGTAGTTTACAAGGGAGAATTGGATGATGGGACTAAGATTGCGGTGAAACGAATGGAATCGGGTGTCATTACCAGCAAAGCCATGGATGAGTTCCAGTCTGAGATTGCAGTTCTTTCAAACGTCCGGCACCGGCATTTGGTATCTCTATTGGGTTATTCAGTTGAAGATAATGAGAGGATTCTGGTTTATGAGTATATGCCACAGGGGGCTCTCAGTATGCATCTTTTCCATTGGAAGAGCTTGCAACTGGAACCACTCTCTTGGAAGAGGAGGCTCAATATTGCCTTGGATGTTGCTAGAGGAATGGAGTATCTTCACAGTCTGGCACACCAGATCTTCATTCACAGAGATCTTAAATCATCAAATATTTTGCTTGGGGATGATTTTAGAGCAAAAGTCTCGGATTTTGGATTGGTAAAACTTGCTCCTGATGGCAAAAAATCTGTAGTGACCCGGCTTGCTGGTACATTTGGATACTTGGCACCAGAATATGCAGTGACAGGCAAAGTCACCACCAAAGCAGATGTTTTCAGTTTCGGCGTTGTGCTAATGGAGCTGCTAACTGGATTAATGGCACTTGATGAGGATAGACCTGAGGAAAGGCAGTACCTGGCATCGTGGTTCTGGCATGTAAAATCAGACAAGGAGAAACTAATGGCTGCTGTTGACCCTGCCCTTGACATAAAGGAAGAAATGTTCGACATTGTCTCCATCATTGCCGAGTTAGCTGGGCACTGCACTGCCAGAGAACCATACCAAAGACCAGATATGAGTCATGTTGTGAATGTTCTTGGACCGCTTGTTGAGAAATGGAAACCATTAGATGATGATACTGAGGAGTATTCTGGCATAGATTACACTCTTCCCCTTAACCAAATGGTGAAGGATTGGCAGGAGACAGAAGGAAAGGAGTTGAGTTATGTGGACCCGCAGGACAGCAAGAGTAGTATCCCTGCAAGGCCTACTGGGTTTGCAGAGTCTTTCACTTCTGTTGATGGCCGCTGA 2892 0.4665 MTVALTNSLPLLLFSLWTVVLTETDPNDVGILNSFRRGLKNKELLPWPEEGGDPCGNPPWKYIFCNGNRVSQIQTKNLGLVGPLPSNFNKLSMLENLGMQNNNLNGPLPSFNGLSNLKYAFLNRNGFESIPGDFFRGLRSLQVLALDYNNLNASSGGWVLPQTLEDSAQLRNFSCMSCNLVGPISAFLGSLSSLEVLQLSGNSLTGEIPAALNAVPALQILWLNNQRGDGLTGKIEVVASMISLTSLWLHGNKFSGSIPVNIGDLVSLRDLDLNGNEFVGLIPRGLSGMKLERLDLNNNHFMGPIPDFAADKVSFESNNFCLSKPGVMCAFEVMALLDFLGELGYPQILVDSWSGNNPCDGPWLGIKCNGDGKVEMIILSNFNLSGTLSPSVAKLDSLVGIRLGGNDISGRIPSNWTSLRSLTLLDLSGNNISLPLPSFGKGVKLVIDGNPQLGGAPEVSLSPPGSGSGPSSGSGKVEPPSSDKRNPNPSEGSSPNPKSGSVSLESNNSRGKSLVLIVAPIAGVAAAAFVLIPLYVYCFRKRKGVSDRAGSLVIHPGDPSDSNNALKVVIANNNNGSVSTVTGAGSGTLNGSGESHVIESGNLVISVQVLRNVTKNFARENELGRGGFGVVYKGELDDGTKIAVKRMESGVITSKAMDEFQSEIAVLSNVRHRHLVSLLGYSVEDNERILVYEYMPQGALSMHLFHWKSLQLEPLSWKRRLNIALDVARGMEYLHSLAHQIFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGKKSVVTRLAGTFGYLAPEYAVTGKVTTKADVFSFGVVLMELLTGLMALDEDRPEERQYLASWFWHVKSDKEKLMAAVDPALDIKEEMFDIVSIIAELAGHCTAREPYQRPDMSHVVNVLGPLVEKWKPLDDDTEEYSGIDYTLPLNQMVKDWQETEGKELSYVDPQDSKSSIPARPTGFAESFTSVDGR 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00117 963 ProSitePatterns Protein kinases ATP-binding region signature. 623 645 IPR017441 GO:0005524
Phco6g00117 963 Gene3D Transferase(Phosphotransferase) domain 1 695 913 - -
Phco6g00117 963 ProSitePatterns Serine/Threonine protein kinases active-site signature. 742 754 IPR008271 GO:0004672|GO:0006468
Phco6g00117 963 SUPERFAMILY Protein kinase-like (PK-like) 595 893 IPR011009 -
Phco6g00117 963 Gene3D Phosphorylase Kinase; domain 1 586 694 - -
Phco6g00117 963 CDD STKc_IRAK 623 896 - -
Phco6g00117 963 Gene3D Ribonuclease Inhibitor 26 327 IPR032675 -
Phco6g00117 963 MobiDBLite consensus disorder prediction 938 952 - -
Phco6g00117 963 SUPERFAMILY L domain-like 332 442 - -
Phco6g00117 963 FunFam Receptor-like kinase TMK4 26 326 - -
Phco6g00117 963 MobiDBLite consensus disorder prediction 454 506 - -
Phco6g00117 963 FunFam receptor protein kinase TMK1 579 694 - -
Phco6g00117 963 SMART serkin_6 617 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00117 963 SMART LRR_typ_2 191 215 IPR003591 -
Phco6g00117 963 SMART LRR_typ_2 419 442 IPR003591 -
Phco6g00117 963 SMART LRR_typ_2 265 288 IPR003591 -
Phco6g00117 963 SMART LRR_typ_2 241 264 IPR003591 -
Phco6g00117 963 SMART LRR_typ_2 138 167 IPR003591 -
Phco6g00117 963 SMART LRR_typ_2 114 137 IPR003591 -
Phco6g00117 963 Gene3D Ribonuclease Inhibitor 331 456 IPR032675 -
Phco6g00117 963 Pfam Leucine rich repeat N-terminal domain 334 369 IPR013210 -
Phco6g00117 963 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Phco6g00117 963 FunFam Leucine-rich repeat receptor-like kinase 331 456 - -
Phco6g00117 963 SUPERFAMILY L domain-like 24 307 - -
Phco6g00117 963 ProSiteProfiles Protein kinase domain profile. 617 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00117 963 PANTHER OSJNBA0070M12.3 PROTEIN 11 963 - -
Phco6g00117 963 Pfam Protein tyrosine and serine/threonine kinase 620 893 IPR001245 GO:0004672|GO:0006468
Phco6g00117 963 FunFam receptor protein kinase TMK1 695 912 - -
Phco6g00117 963 MobiDBLite consensus disorder prediction 933 963 - -
Phco6g00117 963 MobiDBLite consensus disorder prediction 464 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00117 Phco-Chr6 1118740 1122274 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Phco6g00117 PK_Tyr_Ser-Thr 1.1e-46 CL0016