LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco6g00098	ATGTCCACCGCCGCCGGACCTACCGACCGCCGTGCCTCGCCGCCGCGGGGGCCTGCCGGCACCCCTGCCCGCCCGCCGCTCAAGCGACACCTCGCTTTCGTCACCAAACCGCCGTTTGCTCCCCCGGACGACTACCACAGCTTCTCCTCCATTGACTCCCGCCGCCTCGCCGATGAAGCCGTTGTCGTTAGATCTCCATACATGAAGCGAAAGGGTGGAATGAACGACAGTGAAGGAGAGTCTCACGCACAAAAGTGGAGTAACAGTCCTGGATACACTAATGTTAGTAACATAACGAATAGTCCCTTTAAAACTCCAGTGTCTGCAAAAGGGGGAAGGACACAGAAGGCAAAGGCTTCCAAAGAAGGCAGATCATGTCCTCCAACACCCATCTCAAACGTTGGTTCCCCTTCTCCTCTTACTCCTGCCAGCAGCTGTCGGTATGACAGTTCCTTAGGTCTCTTAACCAAAAAGTTCATCAATTTGGTCAAGCATGCAGAGGATGGTATTCTTGATCTAAATAAAGCAGCCGAGACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACGAATGTTTTGGAAGGCATTGGTCTCATTGAAAAGAAGCTCAAGAACAGAATACATTGGAAGGGAATTGAATCTTCCACGTCTGGTGAGGTGGATGGCGATATCTCTGGGCTTAAGGAAGAAGTTGAGAAACTTTCTTTGGAGGAGCAGGGATTAGATGATCAAATTAGGGAAATGCAAGAAAGATTGAGGAGGCTGAGTGAAAAAGAAAGCAACCAGAAGTGCCTTTTCGTGACTGAGGATGATATTAAGAGCCTACCTTGTTTGCAGAATGAAACTTTAATAGCAATTAAAGCTCCGCATGGAACTACCCTGGAAGTCCCTGATCCTGAGGAAGCTGTAGACTATCCTCAGAGGAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTACCTTATCAGTCAATTTGAAGAGAAATTTGAAGAGGTTAATGGTGCTGAGCTCCCCATGATCCCACTTGCTTCCAGTTCCGAGTCCAACGAACAACTAATGACAGAAATGGTTCCTGCCGAATCCAGCGGAAAAGAATTTGAACCTCAAACCCAGCTGTCTTCTCATGCATACTCCGATCTAAATGGTTCACAAGAGTTTGCTGGTGGCATGATGAAGATTGTCCCTTCAGATGTTGATAATGACGCTGATTATTGGCTTCTGTCAGATGCTGACGTTAGTATAACAGATATGTGGAGAACAGATTCTACTGTTGATTGGAATGGGGTAGACATGCTTCATCCTGATTTTGGAATTATTTCGAGGCCACAAACTCCATCATCGGGGTTTGTTGAAGTGCCAACACCAGGAGCAAACTCTACTCATAAGTGA	1404	0.4694	MSTAAGPTDRRASPPRGPAGTPARPPLKRHLAFVTKPPFAPPDDYHSFSSIDSRRLADEAVVVRSPYMKRKGGMNDSEGESHAQKWSNSPGYTNVSNITNSPFKTPVSAKGGRTQKAKASKEGRSCPPTPISNVGSPSPLTPASSCRYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESSTSGEVDGDISGLKEEVEKLSLEEQGLDDQIREMQERLRRLSEKESNQKCLFVTEDDIKSLPCLQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLISQFEEKFEEVNGAELPMIPLASSSESNEQLMTEMVPAESSGKEFEPQTQLSSHAYSDLNGSQEFAGGMMKIVPSDVDNDADYWLLSDADVSITDMWRTDSTVDWNGVDMLHPDFGIISRPQTPSSGFVEVPTPGANSTHK	467

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco6g00098	467	Gene3D	-	219	329	-	-
	Phco6g00098	467	MobiDBLite	consensus disorder prediction	80	108	-	-
	Phco6g00098	467	Pfam	E2F transcription factor CC-MB domain	228	328	IPR032198	GO:0046983
	Phco6g00098	467	MobiDBLite	consensus disorder prediction	126	142	-	-
	Phco6g00098	467	Coils	Coil	225	266	-	-
	Phco6g00098	467	Gene3D	-	141	214	IPR036388	-
	Phco6g00098	467	MobiDBLite	consensus disorder prediction	68	142	-	-
	Phco6g00098	467	CDD	E2F_DD	225	329	IPR032198	GO:0046983
	Phco6g00098	467	MobiDBLite	consensus disorder prediction	1	56	-	-
	Phco6g00098	467	SUPERFAMILY	E2F-DP heterodimerization region	225	329	IPR037241	-
	Phco6g00098	467	MobiDBLite	consensus disorder prediction	447	467	-	-
	Phco6g00098	467	FunFam	E2F transcription factor 1	141	214	-	-
	Phco6g00098	467	SUPERFAMILY	"Winged helix" DNA-binding domain	147	210	IPR036390	-
	Phco6g00098	467	PANTHER	TRANSCRIPTION FACTOR E2F	77	429	IPR015633	GO:0000978\|GO:0006357
	Phco6g00098	467	SMART	E2F_TDP_2	147	212	IPR003316	GO:0005667\|GO:0006355
	Phco6g00098	467	Pfam	E2F/DP family winged-helix DNA-binding domain	149	212	IPR003316	GO:0005667\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco6g00098	Phco-Chr6	974256	978545	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	E2F-DP	Phco6g00098		E2F_CC-MB	2.9e-34	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco6g00098	6	974256	978545	Phco6g00098	6	974256	978545	ECH