Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00069 ATGTTAAAGTCAGTGTCATTTGGACTGTTGTTAACTTGGTTTCTGGTGCTCACGTGTGTGTTTGCAACAGATATTCAAAGATGTAACTGTGATGATGAGTCGAGCTTCTGGACTATTGAGACCATTCTGGAGTGCCAAAGGGTTGGTGATTTTCTGATTGCTGTGGCCTACTTCTCTATCCCTGTTGAGCTTCTTTACTTTGTTAGTTGCTCAAACTTCCCATTCAAATGGGTCCTCTTTCAGTTCATTGCTTTCATTGTACTTTGTGGAATGACACATTTGCTGAATGGGTGGACTTATGGTCCCCACACTTTTCAACTCATGGTGGCAATCACTGTATTCAAAACTCTCACTGCCTTGGTGTCATGTGCCACTGCCCTTACTCTCCTCACTCTGATCCCTCTGCTGTTGAAAGTGAAGGTTAGGGAATTCATGCTGAAGAAAAAGACCTGGGATCTTGGGAGGGAGGTTGGGTTCATAATGAAACAGAAGGAGGCTTCAGTGCATGTAAGAATGCTTACTCAAGAGATTCGAAAGTCGTTGGACAGGCACAAGATTCTGTACACCACCTTGGTTGAGCTGTCTAAGACACTTGGTTTGCAAAACTGTGCAATTTGGATGCCAAATGATGAGAAAACTGAGATGAACCTTACTCATGAATTGAATGGGAGGAATGCCAACTGTTCTATTCTCATAACTGATCCAGATGTTGCGAGAATTAAGGGGAGTGATGAAGTAAACGTAATTGATTCTGATTCAGTACTTGCCACTGCCAGCAGTGGAGATTCTGGTGTGGCAGGACCAGTTGCTGCAATTCGAATGCCGATGCTTCGGGTTAGCAATTTCAAAGGGGGAACGCCGGAGCTAAGGCAGACGTGTTATGCCGTATTGGTTTTGATTCTTCCTGTCACGGAGCCTAAATCATGGAGCACTCAAGAGCTGGAGATCATTAAGGTGGTTGCTGATCAGGTGGCTGTGGCCCTGTCTCATGCTGCAATTCTTGAAGAGTCTCATCTAATGAGGGAGAAGTTGGAGGAACAAAATCGAGCATTGCAATTGGAAAAGATTAATGCTATGAGGGCCAACCAGGCTAGAGCAGCATTTCAGAAGGTCATGAGTAGTGGAATGGGAAAGCCTATGCACTCAATTTTGGGGCTGCTTTCAGTGATGCAAGAAGAGAAGTTAAAGCGTGAACAGAAACTCATTGTGGATTCTACGTTCAGAACCAGCACTGTCATGTCAAACCTGCTAAATGATGCCATGGACTGCTCGGCAAGAGATGATGGAAGATTCCCTTTGGAGATTAAGCCTTTTGGACTGCATGCTATGGTGAAGGATACAGCTTGCTTTGCCAGGTTCATGTGTATTTATAGGGGCATTGCCTTTGTTGTTGATGCGGATAAGTCTTTGCCAGACAATGTTATAGGTGATGAAAAGAGGGTCTTCCAAGTGCTTTTGCATATGGTTGGGAGTGCAATAAATGGTAACCAAGGAGGAGGGGTTCTTGTGTTCCGAGTTTATGCAGAAACTGGTAGTCAAGGGAGGAATGACCAGGGATGGACAAACTGGAGACCAAGCTCTTCAAGTGGGGATGTAAATATCAGATTTGAGATAGGAATCAATATTGGTGATTCTGAAATGGAAAATTCAGTTCCTTCAGGGCAGCTTCCGGGTACAATGCGTTTTAGTGATAGGGTTGAGGAAAGATTGAGCTTCAGCATTTGCAAGAGAATAATCCAGTTGATGCAAGGGAACATATGGTATGTACCAAACGCTCAAGGTCATCCTCAGGTCATGGCCATTTCTCTACGGTTTCAACTGCAGCGATCTATTGCTGTATCCATCTCTGAAACTGGGGAAAGTTCTGAGCCATCAAGTTCCAACTCTTTTTTCAGAGGTCTGCAAGTGTTGTTGGTGGACAACGATGATGTAAATAGAGCAGTGAGTCAGAAGTTGCTTCAGAAACTAGGCTGCTCTGTGACTGCTGTTTCTTCAGGATTTGAATGCCTCAGTGTCATTGGACCTGGTGGATGCTCCTTTCAAGTCATTGTTTTGGATCTTCACATGCCTGAGCTTGATGGATTTGGAGTTGCATCAAGGATTCGCAAGTTCGGAAGCCGAAACTGGCCAGTGATTGTTGCCTTGACTGCAAGCACAGACGATTTGTGGGAAAAATGCATGCAAGTTGGCATAAATGGAATCATAAGAAAGCCAGTTTTGTTGCATGGAATTGCCAGTGAACTCAGAAGAATCCTGTTGCAGGGAAATACTGTCATGTGA 2280 0.4434 MLKSVSFGLLLTWFLVLTCVFATDIQRCNCDDESSFWTIETILECQRVGDFLIAVAYFSIPVELLYFVSCSNFPFKWVLFQFIAFIVLCGMTHLLNGWTYGPHTFQLMVAITVFKTLTALVSCATALTLLTLIPLLLKVKVREFMLKKKTWDLGREVGFIMKQKEASVHVRMLTQEIRKSLDRHKILYTTLVELSKTLGLQNCAIWMPNDEKTEMNLTHELNGRNANCSILITDPDVARIKGSDEVNVIDSDSVLATASSGDSGVAGPVAAIRMPMLRVSNFKGGTPELRQTCYAVLVLILPVTEPKSWSTQELEIIKVVADQVAVALSHAAILEESHLMREKLEEQNRALQLEKINAMRANQARAAFQKVMSSGMGKPMHSILGLLSVMQEEKLKREQKLIVDSTFRTSTVMSNLLNDAMDCSARDDGRFPLEIKPFGLHAMVKDTACFARFMCIYRGIAFVVDADKSLPDNVIGDEKRVFQVLLHMVGSAINGNQGGGVLVFRVYAETGSQGRNDQGWTNWRPSSSSGDVNIRFEIGINIGDSEMENSVPSGQLPGTMRFSDRVEERLSFSICKRIIQLMQGNIWYVPNAQGHPQVMAISLRFQLQRSIAVSISETGESSEPSSSNSFFRGLQVLLVDNDDVNRAVSQKLLQKLGCSVTAVSSGFECLSVIGPGGCSFQVIVLDLHMPELDGFGVASRIRKFGSRNWPVIVALTASTDDLWEKCMQVGINGIIRKPVLLHGIASELRRILLQGNTVM 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00069 759 Gene3D - 428 611 IPR036890 -
Phco6g00069 759 Pfam GAF domain 182 328 IPR003018 GO:0005515
Phco6g00069 759 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 433 592 IPR036890 -
Phco6g00069 759 Gene3D - 162 329 IPR029016 -
Phco6g00069 759 FunFam Ethylene receptor 4 331 425 - -
Phco6g00069 759 CDD HATPase_ETR2_ERS2-EIN4-like 470 603 - -
Phco6g00069 759 Pfam Response regulator receiver domain 636 739 IPR001789 GO:0000160
Phco6g00069 759 Coils Coil 334 361 - -
Phco6g00069 759 FunFam Ethylene receptor 632 755 - -
Phco6g00069 759 Gene3D - 330 427 - -
Phco6g00069 759 SUPERFAMILY GAF domain-like 185 331 - -
Phco6g00069 759 PIRSF Ethylen_sen_hybr_HK 1 759 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Phco6g00069 759 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 24 754 - -
Phco6g00069 759 CDD REC_ETR-like 634 748 - -
Phco6g00069 759 SMART gaf_1 182 338 IPR003018 GO:0005515
Phco6g00069 759 SMART REC_2 634 752 IPR001789 GO:0000160
Phco6g00069 759 SUPERFAMILY CheY-like 631 752 IPR011006 -
Phco6g00069 759 ProSiteProfiles Response regulatory domain profile. 635 752 IPR001789 GO:0000160
Phco6g00069 759 Gene3D - 614 751 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00069 Phco-Chr6 664085 666917 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco6g00069 GAF 1.5e-12 CL0161