Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00064 ATGGAGGAAGAAGAACCTTCCATAACATCGCCACTTCCAGGAACGTTACACAAGTTCCTCTCCCGCAGTGCCAAGCCTGTCTTCGCCTCGACGCCTCTCGCAGTGGTCCGCTCCACCACCAGCAACGGCGGCGCGCGCGTTCTTGCCGCGCCGCAAAACCCTAACGAGAACGATCCTCTCCAGGAAGAAGGACAAGGCGAAACTGGCTTCGAGGTTTCTTATTTCACCGCGCTGAAGAAAAAGCAACAACAACGACACAGGCTTTCGTTCGAGAGGTTTCTCAAGGCGACGAACACAATGGTCGAGTCCAAAGGAGAGTCTCTGAAATCGAAGGCGCCATTGGAAGAAAGACTGGAAGAAGAGGAGGAGGAAGGCGAAGAGGCCGAATCAACTCCACCGGTTCAACCGGTGCCGAGAGTGTCGGAACCGGTTCGACCTGTGCAAACGGTTACTGAGGAGGTGGAGGTTGTGGAGGTGCGGAAGACTGTGGAGAAGAGGAATGTTCCTAATCTCGAGGACGGGGAGTTTCCGGAGGAGGCTGGATGGTTCTTGCTTGGGAGGAAGGTTGAGGTTGCGGTTTCGACGGCCAGAGGAGTGAACAGGTTGGTGGACAATGAAATCATTCATTTCAACTTTCCTCTTCCGACTTACTCGAGGAAGTCTCAGTTGATCGTTCGTGTTTCAACCAAGCGTTCTGGAGAGGTTGGGAGGATGCCAATGGAATGGGCAAAGATTGTGATTCCGCTTATGCGCTCTGGAAAGGTCAAGGTTCGAGGCCGATGCATTGCTGCCCCAGTTAAACTGGAGATGATGCAAGAGATTATGTTTTTAGTGAGCTTTTATATTCACAACTCTGTATTTGCCGACCATGTTGACACCTCTTGGAGGCTAGAGGCTTGTGGTAAAATTGATGATACTATATACCCACTTCTTGCACTACTAAAAATGCTAGAGATCGAGCCATCCCAAAATGCCGAATTCACGCCAGAAGATATAGATTCTCGAAAACGGTTACTCTATCCGAGTGCTGCGTCAGATGAAGCTGCAGGATTGCCTTTGATCAAGCGAAGAAAGGGTGGTGAGCCTATTCCAGAGCAAACTAATGACGAACAAGCTCTTTCAGAGTCAGCTTTGAACAAAATTGTTGGGGCTGCAGAATTCTATGACTTAAAGGAGAAGGAAGCCCCAAAGGCACTTATGTGTAATTTAAAGCCTTACCAGAAGCAAGCCCTGTATTGGATGGGTGAAATCGAGAAGGGAACGGATGTTGAGAGTGCAGAAAGAAATCTGCATCCCTGCTGGTCAGCCTACACTATATGCAAGGGAAGGATTATTTATGTCAATATATTTACCGGCGAGGCTTCAAAGAAATTTCCCAAATCAACTGAGATGGCAAGAGGAGGAATTCTAGCGGATGCAATGGGACTTGGAAAGACAGTTATGACAATTGCTCTGATACTCAGTAATCCAGGCAGAGGCAACTCAGAAAACAAGGATGCGGTGAATGGATATGATGATCTTATGGCAAATAAAAGAAATAACGCTAACGCGATGAGTAAAGTCGAGGGTGGCACTCTTATTGTTTGTCCCATGGCTTTGTTAGGTCAATGGAAGGCGAGTGATGAGCTTGAAACGCATTCAAAGCCCAGTAGTATATCCATATTTGTTCATTATGGTGGCGGAAGAACCGATGATCCCTTGTTCATCGCAGGTCATGATGTTGTCTTAACAACTTATGGGGTCCTATCAGCTGATTACAAAAATAATGGAGACAATAGCATCTACCACAAGGTCCAGTGGTACAGGGTGGTGCTGGACGAAGCTCATAATATAAAAGCCCATAGAAGTCAGGTTTCCCAGGCTGTTTTTACTCTCTCATCACGCAGCCGCTGGTGTCTAACTGGAACGCCGCTTCAGAATAGCTTGGAAGACCTATACAGTCTCTTGTGTTTCTTGCGTGTTGAACCTTGGTGCAACTGGGCATGGTGGCAGAAGTTGATTCAAAGACCTTATGATAATGGTGATCCAAGATCCCTGAAGTTGGTCAAAGCCATTTTGAGGATGATAATGCTAAGAAGAACGAAGGAATCGAAAGATAAAGAGGGAAGGCCTATACTTTGCCTGCCTCCAATTGATATTGAATTCATTGAATGTAAACAATCAGAATCTGAACGTGACTTCTACGAAGCCCTTTTCGAGCGATCTAAAATTCAATTTGATCAGTACGTTGCACAAGGAAAGGTTCTACACCATTATGCCAATATCCTTGACCTTCTAATGCAGTTGAGGCGCTGTTGTAACCATCCGTTTTTGGTTATGTGCGAAAGCAATTCCCAGAAGTATGCAGACTTAGGCAGACTCGCAAGAAGATTTCTTCAGTCTAATACTGAATCATCCAACGAAAGCAATCAAGATGATCCACAGCACCAAGCAGAGTTGAACAAACTCGCAAGTATATTACTTCTAAAATCCGCTTCTTCGCACTCTATCCAACCTCGTGCATACATTGAAGAGGTTTTGGAGAATATTCAAAACGGCGACATTGTAGAATGCTCTGTATGTTTGGAATCTCCAGAAGATCCTGTGTTTACACCATGTGCTCATAAATTTTGTAGAGAATGTCTGTTCAGTTGCTGGGGCACCTCAGCGGGTGGCAAATGTCCAATCTGTCGAAAATTGCTCCGGAAAGATGATCTGATCACTTGTCCAGCTGAAAGCCCATTCAAGGTCGATATTAAGAACAATGTGACAGAGTCTTCGAAGGTTTCAAAGCTATTCGAATTCCTGGAACGTATTTTAAACTCACCTTCGGGTGAAAAGAGTATTGTCTTCAGTCAATGGACTTCATTTTTTGATCTCTTGGAAAATCCATTGAGGCGGAGAGGCATTAGCTTTTTGAGATATGATGGAAAATTGACGCAGAAACAGAGGGAGAAAGTTCTGGATGAATTCAATAAAACAAGGGAGAAAAGGGTTTTGCTGATGTCGCTAAAGGCTGGTGGTGTTGGCTTAAACTTAACGGCAGCCTCGAATGTTTTCATTATGGATCCATGGTGGAATCCTGCTGTTGAGGAGCAAGCAATAATGAGAATTCATCGCATAGGACAAAACCGTAGAGTTAAAGTAAGAAGATTTATTGTGAAGGACACGGTGGAAGATCGGTTGCAACAAGTGCAGGCCAGGAAACAAAGGATGATATCTGGTACCCTCACCGATGATGAGGTTCGGTCTGCTAGGATCAAAGACCTCAAAATGCTATTCACTTGA 3267 0.453 MEEEEPSITSPLPGTLHKFLSRSAKPVFASTPLAVVRSTTSNGGARVLAAPQNPNENDPLQEEGQGETGFEVSYFTALKKKQQQRHRLSFERFLKATNTMVESKGESLKSKAPLEERLEEEEEEGEEAESTPPVQPVPRVSEPVRPVQTVTEEVEVVEVRKTVEKRNVPNLEDGEFPEEAGWFLLGRKVEVAVSTARGVNRLVDNEIIHFNFPLPTYSRKSQLIVRVSTKRSGEVGRMPMEWAKIVIPLMRSGKVKVRGRCIAAPVKLEMMQEIMFLVSFYIHNSVFADHVDTSWRLEACGKIDDTIYPLLALLKMLEIEPSQNAEFTPEDIDSRKRLLYPSAASDEAAGLPLIKRRKGGEPIPEQTNDEQALSESALNKIVGAAEFYDLKEKEAPKALMCNLKPYQKQALYWMGEIEKGTDVESAERNLHPCWSAYTICKGRIIYVNIFTGEASKKFPKSTEMARGGILADAMGLGKTVMTIALILSNPGRGNSENKDAVNGYDDLMANKRNNANAMSKVEGGTLIVCPMALLGQWKASDELETHSKPSSISIFVHYGGGRTDDPLFIAGHDVVLTTYGVLSADYKNNGDNSIYHKVQWYRVVLDEAHNIKAHRSQVSQAVFTLSSRSRWCLTGTPLQNSLEDLYSLLCFLRVEPWCNWAWWQKLIQRPYDNGDPRSLKLVKAILRMIMLRRTKESKDKEGRPILCLPPIDIEFIECKQSESERDFYEALFERSKIQFDQYVAQGKVLHHYANILDLLMQLRRCCNHPFLVMCESNSQKYADLGRLARRFLQSNTESSNESNQDDPQHQAELNKLASILLLKSASSHSIQPRAYIEEVLENIQNGDIVECSVCLESPEDPVFTPCAHKFCRECLFSCWGTSAGGKCPICRKLLRKDDLITCPAESPFKVDIKNNVTESSKVSKLFEFLERILNSPSGEKSIVFSQWTSFFDLLENPLRRRGISFLRYDGKLTQKQREKVLDEFNKTREKRVLLMSLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQNRRVKVRRFIVKDTVEDRLQQVQARKQRMISGTLTDDEVRSARIKDLKMLFT 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00064 1088 MobiDBLite consensus disorder prediction 44 62 - -
Phco6g00064 1088 Pfam HIRAN domain 197 275 IPR014905 GO:0003676|GO:0008270|GO:0016818
Phco6g00064 1088 MobiDBLite consensus disorder prediction 44 67 - -
Phco6g00064 1088 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 844 897 IPR013083 -
Phco6g00064 1088 FunFam DNA repair protein RAD5B 456 694 - -
Phco6g00064 1088 MobiDBLite consensus disorder prediction 100 143 - -
Phco6g00064 1088 CDD DEXDc_SHPRH-like 403 693 - -
Phco6g00064 1088 Gene3D - 457 705 IPR038718 -
Phco6g00064 1088 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 459 655 IPR014001 -
Phco6g00064 1088 Pfam Zinc finger, C3HC4 type (RING finger) 851 890 IPR018957 GO:0046872
Phco6g00064 1088 Gene3D - 898 1086 IPR027417 -
Phco6g00064 1088 Coils Coil 111 131 - -
Phco6g00064 1088 SMART ultradead3 399 672 IPR014001 -
Phco6g00064 1088 CDD SF2_C_SNF 913 1046 - -
Phco6g00064 1088 Gene3D - 709 840 IPR027417 -
Phco6g00064 1088 SMART HIRAN_2 185 282 IPR014905 GO:0003676|GO:0008270|GO:0016818
Phco6g00064 1088 ProSitePatterns Zinc finger RING-type signature. 866 875 IPR017907 -
Phco6g00064 1088 Pfam SNF2-related domain 406 771 IPR000330 GO:0005524|GO:0140658
Phco6g00064 1088 SMART helicmild6 952 1035 IPR001650 -
Phco6g00064 1088 ProSiteProfiles Zinc finger RING-type profile. 851 891 IPR001841 -
Phco6g00064 1088 SMART ring_2 851 890 IPR001841 -
Phco6g00064 1088 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 924 1084 IPR001650 -
Phco6g00064 1088 Pfam Helicase conserved C-terminal domain 927 1035 IPR001650 -
Phco6g00064 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 1079 IPR027417 -
Phco6g00064 1088 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 216 1088 - -
Phco6g00064 1088 SUPERFAMILY RING/U-box 836 896 - -
Phco6g00064 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 693 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00064 Phco-Chr6 595638 601649 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco6g00064 SNF2_N 3e-77 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00064 6 595638 601649 Phco6g00064 6 595638 601649 ECH