Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00049 ATGGTTAGAGCTCCTTGCTGTGAAAAGATGGGGTTGAAGAAGGGTCCTTGGACCCAAGAGGAAGATCAAACCCTCATATCATACATCCAAAAACATGGCCATGGAAACTGGCGTGCCCTTCCAAAGCTTGCAGGGCTACTGAGGTGTGGAAAGAGTTGCAGACTAAGGTGGATTAACTACTTGAAACCTGATATCAAAAGAGGAAATTTCTCAAGTGAAGAAGAAGATATTATCATCAAGATGCATGAGTTGCTGGGAAATAGGTGGTCAGCAATAGCAGCAAAACTACCAGGAAGAACAGACAATGAAATTAAAAATGTATGGCACACTCACTTGAAGAAGAAGTTGCTGAATTCAGTTACCAAAAGGCTTTCCAGTCCAAAAATCAAACGATCTGATTCCAATTCCAGCACCCTAACTCAATCAGAACCTACATCATCATCACCATGCACTACTTCTTCCAGTGATTTTTCATCATTCAGTGACATGAACAACAACACCATGATCAAGAGTGAAGACATAGAGTCTGAGGAGATAACCATGCCTCCAATTGATGAAAGCTTTTGGTCAGAGGAAACAGTGGAAGATGAAAGCTCCACCATCATGATGCCATCAAATTCTTGGACAGTTTCAAATGATCACCACCAATACCAATTTAATTCAGTGGAAACCTTCCAACAACACAGTTTTGGCTATAATGGTTCAAACTTTGATGATGGCATGGATTTTTGGTATGACATATTCATCAGATCAGGAGAGTCAATAGAATTGCCAGATTTCTGA 783 0.4049 MVRAPCCEKMGLKKGPWTQEEDQTLISYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLKPDIKRGNFSSEEEDIIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLLNSVTKRLSSPKIKRSDSNSSTLTQSEPTSSSPCTTSSSDFSSFSDMNNNTMIKSEDIESEEITMPPIDESFWSEETVEDESSTIMMPSNSWTVSNDHHQYQFNSVETFQQHSFGYNGSNFDDGMDFWYDIFIRSGESIELPDF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00049 260 CDD SANT 69 112 IPR001005 -
Phco6g00049 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco6g00049 260 CDD SANT 16 61 IPR001005 -
Phco6g00049 260 SMART sant 66 114 IPR001005 -
Phco6g00049 260 SMART sant 13 63 IPR001005 -
Phco6g00049 260 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Phco6g00049 260 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco6g00049 260 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco6g00049 260 FunFam MYB-related transcription factor 13 66 - -
Phco6g00049 260 Gene3D - 13 66 - -
Phco6g00049 260 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco6g00049 260 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Phco6g00049 260 Gene3D - 68 143 - -
Phco6g00049 260 MobiDBLite consensus disorder prediction 123 164 - -
Phco6g00049 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco6g00049 260 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00049 Phco-Chr6 498502 499831 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco6g00049 Myb_DNA-binding 1.1e-15 CL0123