Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00004 ATGAGTTGTGTTGATGATGGTCCTGTGATTGTGAAGGAGGAGTTTTCTGGAGAAGGCTTTGTCGCTCCACAACCACTTGAGGGGCTTCATGAAAGTGGCCCTCCACCATTCCTCACAAAGACTTATGACATAGTTGATGATGTTTCCACTGATGAGATAGTTTCATGGAGCAGAGAAAACAACAGCTTCGTTGTGTGGGATCCTCAAGCTTTTTCCATCACTCTTCTCCCCAAATACTTCAAACACAACAACTTCTCCAGCTTTGTCAGACAGCTCAATACATATGGGTTTAAAAAGGTGGATCCTGATAAATGGGAGTTTGCTAACGAAGGTTTTCTTAGAGGACAAAGACATCTATTGAAGATCATAAGGAGGAGGAGGACCACTCATCAACCTCAACCACCACAAAAATCTCTGGACCATTGTGTTGAAGTAGGGAGGTTTGGATTAGATGGAGAAATCGATGGGTTGAGACGTGAGAAGCAAGTTCTGATGGTGGAGCTGGTGAAGCTTAGACAACAACAGCAGAACACAAAAGACCACCTTCAATCAATGGAAAATAGGCTAAAAAAGACTGAGCAGAAACAGCAACAGATGATGAAGTTCTTGGCAAGGGCAATGCAGAACCCCAACTTCTTGCAACAATTGGTTCAACAAAGGGAGTGGAGGAAAGAGCTGGAGGAAGCTTTTACCAACAAGAGAAGAAGACCTATTGATGAAGGGCGTAATGATGCTGAAGAATGCTCAAGTTTGGTTAAACTTGAACAGGAGGAGTACACTGAGATATCAGAGCTTGAGGTTTGTGACATAGAGCTTGCTATGAACATACAAAGTGGAAGCCAAAAGAAGACTTGTGGTGAAGAGGAGAAAGGAGGTGAACTTGAAAGTAGAAATGGAGGCGTTGAGGAAGTACTCTTGGAAGAACTTTTGAATGAGGGTGTTGAAGATCTACTAGCATTGGAAAATGATGATAATGAAGATATAATTTTGTTGTCTCAGGAACTTGGTTATTTGGCCTCTAAATCCTAA 1029 0.4218 MSCVDDGPVIVKEEFSGEGFVAPQPLEGLHESGPPPFLTKTYDIVDDVSTDEIVSWSRENNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFKKVDPDKWEFANEGFLRGQRHLLKIIRRRRTTHQPQPPQKSLDHCVEVGRFGLDGEIDGLRREKQVLMVELVKLRQQQQNTKDHLQSMENRLKKTEQKQQQMMKFLARAMQNPNFLQQLVQQREWRKELEEAFTNKRRRPIDEGRNDAEECSSLVKLEQEEYTEISELEVCDIELAMNIQSGSQKKTCGEEEKGGELESRNGGVEEVLLEELLNEGVEDLLALENDDNEDIILLSQELGYLASKS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00004 342 SUPERFAMILY "Winged helix" DNA-binding domain 32 126 IPR036390 -
Phco6g00004 342 FunFam Heat shock transcription factor 1 30 127 - -
Phco6g00004 342 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g00004 342 PRINTS Heat shock factor (HSF) domain signature 37 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g00004 342 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g00004 342 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 246 IPR027725 -
Phco6g00004 342 Coils Coil 154 202 - -
Phco6g00004 342 ProSitePatterns HSF-type DNA-binding domain signature. 76 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g00004 342 SMART hsfneu3 33 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g00004 342 Gene3D - 29 127 IPR036388 -
Phco6g00004 342 Pfam HSF-type DNA-binding 37 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00004 Phco-Chr6 72779 74782 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco6g00004 HSF_DNA-bind 2e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00004 6 72779 74782 Phco6g00004 6 72779 74782 ECH