Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01892 ATGTCTTCTTCTTGTTTCTCTAACAGATGGACAGCTGAGGAGAACAAAGCGTTTGAAAGAGCTCTAGCAGTTCATGACAAGGACACCCCCAACCGTTGGTGCAACATTGCAATGGCTGTTGGTGGCAAAACTCCAGAGGAAGTTAAGAGGCACTATGATCTCCTTGTAGAGGACATCAGGCGTATTGAGTCAGGCCAAGTGCCCTTTCCAACCTATAGGAACCTCAAAGACGGGGCATAA 240 0.475 MSSSCFSNRWTAEENKAFERALAVHDKDTPNRWCNIAMAVGGKTPEEVKRHYDLLVEDIRRIESGQVPFPTYRNLKDGA 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01892 79 SUPERFAMILY Homeodomain-like 8 64 IPR009057 -
Phco5g01892 79 CDD SANT 9 52 IPR001005 -
Phco5g01892 79 Gene3D - 2 69 - -
Phco5g01892 79 Pfam Myb-like DNA-binding domain 8 52 IPR001005 -
Phco5g01892 79 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 6 74 IPR044636 GO:0003700
Phco5g01892 79 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Phco5g01892 79 ProSiteProfiles SANT domain profile. 6 60 IPR017884 -
Phco5g01892 79 SMART sant 6 58 IPR001005 -
Phco5g01892 79 FunFam Transcription factor SRM1 2 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01892 Phco-Chr5 54942588 54942827 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco5g01892 Myb_DNA-binding 3.6e-07 CL0123