Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01870 ATGGGATCTGGCAACGAGGTTCACTCAGTTGAGGAGTTCAGTTTGGAATCCAAGTGGCTTGTAGATCCTAAACAACTGTTTGTTGGTCCGAAAATTGGAGAGGGTGCTCATGCCAAAGTATATGAAGGAAAATATAAAAATCAAAACGTTGCTGTTAAGATCATCAACAAGGGAGAAACCCCGGAAGAGATTTCAAGGAGAGAGGCTCGGTTTGCTAGAGAGGTTGCTATGTTGTCGAGAGTTCAACACAAAAATCTGGTTAAGTTTATCGGGGCTTGCAAAGAACCTGTCATGGTTATAGTAACTGAACTTCTATCAGGTGGAACATTGCGCAAATATCTCTTGAATATGCGGCCAAAGTGCTTGGATATGGCCATGGCTGTTGGATTTGCTCTTGATATTGCCCGAGCAATGGAGTGTTTACACGCCCATGGGATCATTCATCGCGATCTTAAACCTGATAACTTGATCTTGACAGCTGATCATAAGACAGTTAAACTTGCTGATTTTGGACTAGCCAGAGAAGAATCCTTAACAGAGATGATGACTGCCGAAACAGGAACATATCGTTGGATGGCTCCTGAACTTTACAGCACTGTTACTCTAAGACAAGGTGAGAAGAAGCATTACAACCACAAGGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAACTCATCCATAATAAGCTGCCCTTTGAAGGCATGTCTAATCTACAGGCTGCATATGCAGCTGCTTTTAAGAATACAAGGCCAAGTGCTGAAGACCTTCCTGAGGATTTAGCTCTGATTGTAACTTCATGTTGGAAGGAAGATCCAAATGATAGACCGAATTTCAGTGAGATCATACAGATGCTCCTTCGATATCTCTCCACCATTTCACCACCAGAGCCAGTTGTTCATCTGCGGATGACTTCATCCGATAATGTGGTGTTGCCACCAGAATCTCCTGGTACAAGTGCATTAATGCTTGCAAGAGATGACTCTGGAGAAACCTCAACAGCCAAAGCTGAAGACAGGCCTAAGGGGTTTTTCTTCTGCTTTAACCAGTGTTACTGA 1059 0.4344 MGSGNEVHSVEEFSLESKWLVDPKQLFVGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETPEEISRREARFAREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLSGGTLRKYLLNMRPKCLDMAMAVGFALDIARAMECLHAHGIIHRDLKPDNLILTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLALIVTSCWKEDPNDRPNFSEIIQMLLRYLSTISPPEPVVHLRMTSSDNVVLPPESPGTSALMLARDDSGETSTAKAEDRPKGFFFCFNQCY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01870 352 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
Phco5g01870 352 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Phco5g01870 352 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Phco5g01870 352 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Phco5g01870 352 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
Phco5g01870 352 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Phco5g01870 352 FunFam Kinase suppressor of Ras 1 15 105 - -
Phco5g01870 352 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01870 352 FunFam serine/threonine-protein kinase HT1 107 307 - -
Phco5g01870 352 Gene3D Transferase(Phosphotransferase) domain 1 106 306 - -
Phco5g01870 352 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 22 286 - -
Phco5g01870 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Phco5g01870 352 SUPERFAMILY Protein kinase-like (PK-like) 17 313 IPR011009 -
Phco5g01870 352 CDD STKc_MAP3K-like 32 286 - -
Phco5g01870 352 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Phco5g01870 352 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01870 Phco-Chr5 54754635 54757227 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Phco5g01870 PK_Tyr_Ser-Thr 1.5e-58 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g03258 3 58319584 58322800 Phco5g01870 5 54754635 54757227 PCT