Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01869 ATGTGCGATTTTGAAGTGGTGACTTTGTTTTGCAGGAGCTGGCTTAATGACATTGGAGGATTTGCAAGGAAAGTGAAAAATACTACTCTGTCAGCTGCTGATCAAATGAAGAACTGTGAAACATATCGTGAATGTCCCAAATGTCATTATCACACTAATAACAGTGATATTTCTCATGAGTGGCCTGGCTTTCCTGTTGGTGTAAAGTTTGATCCTTCTGATATTGAGCTTTTAAAGCATTTGGAAGCAAAGTGTTGTGTTGGAAACAGAAAGCAGCACGTGTTTATTCATGAGTTCATCCCAACTTTAGAAGGGGAGCAAGGTATTTGCTACACTCATCCAGAAAATCTTCCAGGTGCTAGGAAAGATGGGAACAGTGTTCATTTCTTTCACAAAACAGCTAATGCATATGCTACTGGGAGAAGGAAACGTCGGAAGATTCAGCATCAAGATGGTTTGACTGAGGAGCATGTTCGTTGGCACAAGACTGGTAGGACCAAATCTGTGATAGAAGATGGAGTTCATAAGGGCTTTAAGAAGATCATGGTCCTTTATATAAGGTCTAAGGAAGGGTCCAAGCCATATAAAACCAATTGGGTGATGCATCAGTTCCATCTAGGGAGTGAAGAAGAGGAAAAGGATGGTGAATATGTGGTTTCAAAAGTATTTTATCAGCACCAGAAGCACACTGAGAAGAATGAGGAGAATACAGTAGTTGAAGATTCTAACATGGCAGCACAAGCAGGTCCGAGTACCCCAAACCCAAATCCCCCTACTCGACCTTGCACAGGCAAATGTGATGACCATTTTGATGAAAATGAGCTTCTGTCATTCATCCAGGATGCCAAGCCTATACCTGGAGAATCACTTGCCCCATCATCTGATGGTCAGCATGAGGATATTAAGGTTGACCCTGCATGGTTGGCTGGTGAATCACAGCCTGATTGTGACTTTCATGACTTGGAGGAAATATTGTTAATGTCAGATTCATCTGCTCTTTTTAATCATTCTGGATTGGCCTCCACTTTGAATGGCACTGCAAACAATTTGGTTGCACCAGGAAACACCAATGATTATGCATCTTCTGGAGTTTCTCTCCTGGACACCCTGGAATTGGAATCTCCTCCAGATTTTGATCTTTCTAATTTGCAATTTGGCTCTCAAGACAGCACCCTTCAGTGGATGGACAAGCTATAA 1197 0.4202 MCDFEVVTLFCRSWLNDIGGFARKVKNTTLSAADQMKNCETYRECPKCHYHTNNSDISHEWPGFPVGVKFDPSDIELLKHLEAKCCVGNRKQHVFIHEFIPTLEGEQGICYTHPENLPGARKDGNSVHFFHKTANAYATGRRKRRKIQHQDGLTEEHVRWHKTGRTKSVIEDGVHKGFKKIMVLYIRSKEGSKPYKTNWVMHQFHLGSEEEEKDGEYVVSKVFYQHQKHTEKNEENTVVEDSNMAAQAGPSTPNPNPPTRPCTGKCDDHFDENELLSFIQDAKPIPGESLAPSSDGQHEDIKVDPAWLAGESQPDCDFHDLEEILLMSDSSALFNHSGLASTLNGTANNLVAPGNTNDYASSGVSLLDTLELESPPDFDLSNLQFGSQDSTLQWMDKL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01869 398 ProSiteProfiles NAC domain profile. 64 225 IPR003441 GO:0003677|GO:0006355
Phco5g01869 398 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 12 283 IPR044799 GO:0003700
Phco5g01869 398 MobiDBLite consensus disorder prediction 245 267 - -
Phco5g01869 398 Pfam No apical meristem (NAM) protein 65 206 IPR003441 GO:0003677|GO:0006355
Phco5g01869 398 Gene3D NAC domain 73 231 IPR036093 GO:0003677|GO:0006355
Phco5g01869 398 FunFam NAC domain-containing protein 8 73 229 - -
Phco5g01869 398 SUPERFAMILY NAC domain 49 225 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01869 Phco-Chr5 54749285 54752312 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco5g01869 NAM 4e-20 No_clan