Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01826 ATGGCTTTCAAATGTCACAGCAACCACTACAAGTACAAGTGCAAGAAAGCATCATTGGATGTTGTAATCTTCACAGTGGCCACCCTCTTGTGTTCCTCCCTCTCAGCACTATCTGATCCAAGAATCTCCGTAGTGGAGTCCTACTGTGGCACTCACAAGGCACCACCAAGCAGTAACTACGTCCCAATTTTCACCAAAGAAATGAAAAGGCTTCATGACCTTGTGCACAAAAACAACTGGGGCACTCACTCTGAGGGACTTTCATCAGCCACTCCCATCTATGGTTTGGCACAGTGCTTCCAAGACCTTTCCAACCTTGATTGCCTTCAGTGCTTTGCAGCCAGCCGCACTAAGCTACCTCGCTGCCTCCCTTCAGTTTCTGCTCACATTTACCTTGATGGCTGCTTCCTTCGCTATGACAACTACAGTTTCTACACTGAGGACACTGACCCTTTGAGGGACACAGTGAACTGCACCACACAGTATGGTGTTATGGCTGGTGAGGCTGAGAGGTTGGTGTTTGGCAATAGTGTTGGCAAAGTGGTTGAGAATGTAGTGAGGGTGGCAGTGAATGAAGGAAGAGGGTTTGCAGTGGGAGAAGGTGAGGGAGTTTATGCCTTGGCACAGTGCTGGAAAACTGTTAGGGGAAAAGGGTGTAGAGATTGCTTGAAGAAAGCTGAAAATGAGGTTAGAGGGTGTTTGCCTAAGAAGGAAGGGAGGGCCTTGAATTCTGGCTGTTATTTGAGATATTCTACTGTTATGTTCTACAATCAAGGAGGTGAAGATGGGGAAGGAGATGATTCTTCTAGAAAACGAACCATCATTATAGCAGTATCAGTCTTGGCTGCAGCTGTTGTAGTTCTCTCTCTCTTGGTCACTTATGTAGCCTTCACCAAAAAGAGAAAAAACAACAATTTCATTGAGATTCCCTCTTATTTGAAGAATTCTAGCTTGAATTACAAATATGAAACTCTTGAGAATGCCACAGATTATTTCAGCTCTTCAAGAAAATTAGGCCAAGGAGGAGCTGGTTCTGTATTCAAAGGGACTCTCCCAAATGGGAAAGATGTTGCTGTGAAGAGATTGGTCTTCAATAATAGGCAATGGGTGGATGATTTCTTCAATGAAGTGAATTTAATCAGTGGAATAAATCACAAAAACCTTGTCAAGCTATTGGGTTGCAGTATTGAAGGCCCTGAGAGCCTCATTGTGTATGAGTACCTACCTAACAAGAGCTTAGACCATTTCCTTTTTGAAAAGGACAAAACAAGGATTCTAGAATGGAAGCAAAGGTTTGAAATACTTCTTGGAATTGCAGAAGGGCTTGCATATCTTCATGGAGGCTCTGAAATAAGAATCATCCATAGAGACATCAAAAGTAGCAATGTTCTTCTTGATGAGAATCTCAACCCCAAGATTGCAGATTTTGGTCTTGCCCGGTGTTTTGGTGCTGATAAAACACATCTAAGCACAGGAATTGCTGGAACACTAGGTTACATGGCTCCAGAGTATCTCATTCAAGGACAACTTACAGATAAAGCAGATGTGTATAGTTTTGGAGTACTTGTTCTGGAGACTGCAAGTGGCAGGAAGAATAATGTCTTCCGTGAGGATTCTGATTCCCTTTTGCAAACAGTTTGGAAACTTTACCAATCAAACAGATTGGCTGAAGCTGTTGATCCATGCTTGGGAAATGAGTTTCCTGCAAGAGAAGCATCAAGGGTGTTTAAAATTGGATTACTGTGCACACAAGCTTCTGCTTCCCTTAGGCCATCCATGGCTCAAGTTGCTTGCATGTTAAGCAATTCAAGTTTGGATGTCCCTATACCAAAACAACCCCCATTTTTGAACTCTAGATTGCTGAATCAAACAGCTCCATTAGGTTTTAGCATAGATAACTCCTCATCAAACACATTTAAAAAGATTGGTGTGTCCTACAGCCCCTCTCTGCCTCTAGTTCATGCAGCTTAA 1971 0.4292 MAFKCHSNHYKYKCKKASLDVVIFTVATLLCSSLSALSDPRISVVESYCGTHKAPPSSNYVPIFTKEMKRLHDLVHKNNWGTHSEGLSSATPIYGLAQCFQDLSNLDCLQCFAASRTKLPRCLPSVSAHIYLDGCFLRYDNYSFYTEDTDPLRDTVNCTTQYGVMAGEAERLVFGNSVGKVVENVVRVAVNEGRGFAVGEGEGVYALAQCWKTVRGKGCRDCLKKAENEVRGCLPKKEGRALNSGCYLRYSTVMFYNQGGEDGEGDDSSRKRTIIIAVSVLAAAVVVLSLLVTYVAFTKKRKNNNFIEIPSYLKNSSLNYKYETLENATDYFSSSRKLGQGGAGSVFKGTLPNGKDVAVKRLVFNNRQWVDDFFNEVNLISGINHKNLVKLLGCSIEGPESLIVYEYLPNKSLDHFLFEKDKTRILEWKQRFEILLGIAEGLAYLHGGSEIRIIHRDIKSSNVLLDENLNPKIADFGLARCFGADKTHLSTGIAGTLGYMAPEYLIQGQLTDKADVYSFGVLVLETASGRKNNVFREDSDSLLQTVWKLYQSNRLAEAVDPCLGNEFPAREASRVFKIGLLCTQASASLRPSMAQVACMLSNSSLDVPIPKQPPFLNSRLLNQTAPLGFSIDNSSSNTFKKIGVSYSPSLPLVHAA 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01826 656 FunFam Cysteine-rich receptor-like protein kinase 2 298 407 - -
Phco5g01826 656 ProSiteProfiles Protein kinase domain profile. 332 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01826 656 Gene3D - 168 255 IPR038408 -
Phco5g01826 656 Gene3D - 41 144 IPR038408 -
Phco5g01826 656 SMART serkin_6 332 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01826 656 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 94 620 - -
Phco5g01826 656 ProSiteProfiles Gnk2-homologous domain profile. 42 144 IPR002902 -
Phco5g01826 656 FunFam Cysteine-rich receptor-like protein kinase 2 42 144 - -
Phco5g01826 656 ProSiteProfiles Gnk2-homologous domain profile. 153 255 IPR002902 -
Phco5g01826 656 SUPERFAMILY Protein kinase-like (PK-like) 318 619 IPR011009 -
Phco5g01826 656 CDD STKc_IRAK 338 600 - -
Phco5g01826 656 FunFam Cysteine-rich receptor-like protein kinase 2 408 607 - -
Phco5g01826 656 Pfam Salt stress response/antifungal 56 142 IPR002902 -
Phco5g01826 656 Pfam Salt stress response/antifungal 173 252 IPR002902 -
Phco5g01826 656 Pfam Protein tyrosine and serine/threonine kinase 335 597 IPR001245 GO:0004672|GO:0006468
Phco5g01826 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Phco5g01826 656 Gene3D Phosphorylase Kinase; domain 1 293 407 - -
Phco5g01826 656 Gene3D Transferase(Phosphotransferase) domain 1 408 607 - -
Phco5g01826 656 FunFam Cysteine-rich receptor-like protein kinase 3 156 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01826 Phco-Chr5 54379771 54383360 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco5g01826 PK_Tyr_Ser-Thr 6.6e-45 CL0016