Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01821 ATGAACATGTCTACTTGCAACCCTGCCTCTACCATGGAGGGTCATTCCAACCCTACCACCCCTCATGGGATATCCACCCCTTGTGGTGGAGGATCTCCCCTCATACGCTTTGCTATTGATTCCTATCACCATCCTTTGACCTTGGAACAAAACAGAAAAGTGATGGATGCTTTGCATGGCTACCAAAAAAGCAGTGTCATATGTGAATTTTCACAAAATACCATGTTGCTTCTTCATCCAGCTATGTTAGCTTCTTCTTCCATATCATCACCATTACCGTTTTCACTCTTTAATAAGTGTGAATTAATGGTGACGAGTGAATGTCACTGGGACACTAATCAAAAAATGAAGGAAAAAAATGATACCAACATTGCTAATGATACCATAATCAAAGGGCAATATTGGACTCCTGAAGAAGATAGGGTTCTTGTGGAAATGGTGAATCAATTCGGGCCTACCAAATGGTCACAAATTGCAAGGTCACTACAGGGCAGAAATGGGAAGGGCAGAAATGGGAAGCAATGTCGAGAAAGATGGAACAACCATCTTCGACCAAATATTAGGATGGGAACATGGAGCTTGGAGGAAGACATGATTCTGATCAAAGGGCACCAAGAATTTGGAAATAAATGGTCAAAGATAGCAAAGAAATTGTCTGGTAGGACTGAGAATGCTGTGAAGAACCACTGGAATGCCACCAAGCGACGCCAAAGCTGCAAGAAGAACAACCATGGTCACTACAAAGGGTCAATGCTCCATGCCTATGTCAAATGGGTCACTGCATCATCTGAAGAATCTGCAAAAAAAGTTCCCAAAAAATCCTCAGACAAGAAGAAGAAGAAGAAGGTGGAGGGATGCAATTGTGATGAGCTAGCTATTTTCTTGAGCTAG 891 0.4231 MNMSTCNPASTMEGHSNPTTPHGISTPCGGGSPLIRFAIDSYHHPLTLEQNRKVMDALHGYQKSSVICEFSQNTMLLLHPAMLASSSISSPLPFSLFNKCELMVTSECHWDTNQKMKEKNDTNIANDTIIKGQYWTPEEDRVLVEMVNQFGPTKWSQIARSLQGRNGKGRNGKQCRERWNNHLRPNIRMGTWSLEEDMILIKGHQEFGNKWSKIAKKLSGRTENAVKNHWNATKRRQSCKKNNHGHYKGSMLHAYVKWVTASSEESAKKVPKKSSDKKKKKKVEGCNCDELAIFLS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01821 296 MobiDBLite consensus disorder prediction 262 283 - -
Phco5g01821 296 SUPERFAMILY Homeodomain-like 131 230 IPR009057 -
Phco5g01821 296 Pfam Myb-like DNA-binding domain 135 197 - -
Phco5g01821 296 CDD SANT 191 234 IPR001005 -
Phco5g01821 296 Gene3D - 191 253 - -
Phco5g01821 296 CDD SANT 135 183 IPR001005 -
Phco5g01821 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 238 IPR017930 -
Phco5g01821 296 FunFam Transcriptional activator Myb isoform A 130 188 - -
Phco5g01821 296 ProSiteProfiles Myb-like domain profile. 135 183 IPR001005 -
Phco5g01821 296 PANTHER MYB PROTEIN-RELATED 132 272 - -
Phco5g01821 296 Gene3D - 134 188 - -
Phco5g01821 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 183 IPR017930 -
Phco5g01821 296 SMART sant 188 236 IPR001005 -
Phco5g01821 296 SMART sant 131 185 IPR001005 -
Phco5g01821 296 MobiDBLite consensus disorder prediction 1 25 - -
Phco5g01821 296 ProSiteProfiles Myb-like domain profile. 184 234 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01821 Phco-Chr5 54339507 54341879 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco5g01821 Myb_DNA-bind_6 5.6e-16 CL0123