Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01773 ATGGAGTCTGGACGGCTTTTCTTTGATGCCTGTGCTTCTCGGGGGAACACCAACATGCTCTTCCTCGGTAACACTGAACTTGCTTTCCGAGGGAGATCGATGATGAGCTTGGAGGAAGCCTCAAAGAGGCGACCTTTCTTCACCTCACCGGATGAACTGTATGATGAGGAGTATTATGAGAAGCAGATGCCGGAGAAGAAGCATCGCCTCAGTTCTGAACAGGTCCATCTGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTGGAGCCTGAGAGGAAGACCCAGTTGGCCAAGAAGCTGGGATTGCAACCAAGGCAGGTGGCTGTGTGGTTTCAGAACCGCAGGGCTCGATGGAAGACCAAACAGCTTGAAAGGGATTTCGATGTTCTCAAGTCCTCATACGATACCCTACTTTCATCCTATGATTCACTTATGAAGGATAATGAGAAACTCAAATCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGAGGTTCCTGAGGAACCATTCTATGACAAGAAAGTTGATCCACTTCCAGTAGAAGATATAGCTACAATTTTCAGCACAAGGGTGGAGGACCACCAGAGCAGTGGGTCTGTTGGAAGTGCAGTGGTGGATGAGGGTAGTCCACAGCTGGTCGTTGACAGTGTTGATTCATACTTACCAGCCGACAACCCTGGTGGATGTGTGGGGCCCGTTGAAAGAATTCAGTCAGAGGAGGAGGATGGGAGTGATGATGGGAGGAGTTACATGGATGTGTTTGTGGTATCTGAAACTGAGAACCAAAACCATGAGGAAGGAGAGGCATTGGTTTGGTGGACCAATATGTATTATGTTGGATAA 855 0.476 MESGRLFFDACASRGNTNMLFLGNTELAFRGRSMMSLEEASKRRPFFTSPDELYDEEYYEKQMPEKKHRLSSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDFDVLKSSYDTLLSSYDSLMKDNEKLKSEVVSLNEKLQVQAKEVPEEPFYDKKVDPLPVEDIATIFSTRVEDHQSSGSVGSAVVDEGSPQLVVDSVDSYLPADNPGGCVGPVERIQSEEEDGSDDGRSYMDVFVVSETENQNHEEGEALVWWTNMYYVG 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01773 284 FunFam Homeobox-leucine zipper protein HAT5 59 123 - -
Phco5g01773 284 SMART HOX_1 63 125 IPR001356 GO:0003677
Phco5g01773 284 SUPERFAMILY Homeodomain-like 53 123 IPR009057 -
Phco5g01773 284 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Phco5g01773 284 Pfam Homeodomain 66 119 IPR001356 GO:0003677
Phco5g01773 284 Coils Coil 134 168 - -
Phco5g01773 284 CDD homeodomain 66 122 IPR001356 GO:0003677
Phco5g01773 284 PRINTS Lambda-repressor HTH signature 101 117 IPR000047 GO:0003677
Phco5g01773 284 PRINTS Lambda-repressor HTH signature 92 101 IPR000047 GO:0003677
Phco5g01773 284 Gene3D - 63 127 - -
Phco5g01773 284 MobiDBLite consensus disorder prediction 228 252 - -
Phco5g01773 284 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Phco5g01773 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 52 210 IPR045224 GO:0003700
Phco5g01773 284 Pfam Homeobox associated leucine zipper 121 163 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01773 Phco-Chr5 53796804 53799338 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco5g01773 Homeodomain 6.4e-18 CL0123