Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01771 ATGATCATGGAGCTCCCCGATTCCACCGGCGGCGAACGCAACCTCAACGCGCCGCCGCCGCCGCCCCAGCACAACAACCACCACCAGGACGCTCGCTCAGGTCTTGGAATCGACCTTAACGAGATCCCTTCGCCTTCCTCCTTGTTCGCCGAAACCCTACCGGACTCGGTCACTGTCGACGTTGTCCGCGCGTATCACGATAACCCCGGGCCGCCTCCGGGAGCCCCCGCCGCCGTCCCCAGCGGCGGCCTCGCTAATTGCGCTGCCTGCTCCAAGCCCTGCCCCGCCGCCGCCGGGAGTCACCACCACCTCGTCGTGTGCGACGGTTGCGAGCGCGGCTTCCATCTCGCTTGCGCCGGAATTCGCGGCGGAGGACGCCAGGCCGCGAGCCTCGAGGAGTGGGTATGCGGCGAGTGCGTCGCCGCTGGAGTGAAGAGCAAGCGGTGGCCGTTGGGAGTGAAGCAGCTGCTTGATATCAATGCTCCGCCACCGAGCGAAGCCGAAGGCGACGGCGTCGGCGACGGAGATGCGCAGGATTTGAGAAAGCACACTCTGGGTGATAATTATTTTGGTGCCAATCCATTTGCTGCCCCTGTGACGTATTCAAACTTTTACAATGGAAATGCTACTGGCTTCCAAAAGGCTTCTGGAGGTTTGACTCATGCTGATAGAGTGGGTTTTGAGGATATATTGAATCATACTCAATCAATTACTAGAAGATTTGAGGAGGCTCTTAAAGATTTTATATCTGAACAACGTGGTGTACTAGAGGAAGGTTGGCGAGTGGAATTTAGACAATCAGTGAGCAGCACTGAACTATATGCAGTTTACTGTGCACCTGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTTGTTATTTGGGGCTAATGTCTGGCTTCAACTCAGTTGAATCTGAACTAAGAAATGAGAGGTCTCTCGCATCTTTAAGTGGGTCTCTGTCTAGAAAAAAAAAGTCAACAAGATCTGCAGTGGTCAATGGTTTTGTGGAAAAACGGGGAACCATGATGAATAGTAATTGTAAGGATCCTTCCACTGAAGGTTTAAATGTGGAATGTGCTACTACTAGGGGTAATATCCCAAAACCCTTTGAAAGTGGAAGAAAAGATGATGGACACTCCTGCCCTCCACAATTTGAGGATGAACTTCCTCTACAGTTCAATGACTTCTTTGTTCTTTCATTGGGGAAAGTTGATGTGAGACCATCATATCATGATGTTAATCTTATCTGTCCTGTAGGTTTTAAATCTTGTTGGCATGACAAGATTACTGGTTCTCTCTTTACATGTGAAGTTTTGGAGGGTGGTGATTCTGGACCTATATTTAGGATCCGAAGGAGTTCCTGTTCAGAATTTCCTGTTCCAGTTGGGTCAACCATCATTTCACTGTCAAAGTTTTGTCAACTTGTGTGTCAAGCCAATGAAGGTGAGAGAAAAACTAGTGCTAGTATGGATTTGGATGATGGTGAAAGTATCCAGATGATGCTTCAAGACCCTTGTGTACCAACTGAAAATGATGTCCTAAGTTGCTCTGCAAACTTCTCAATTAGGGATACGCATATATCAGATGTATTACGCCCTGTGACTGGTTCAGTTCAAGATAATACTATAAATTCGTTAGCTGGTAACTTAGAGTTTAATGATGGAATTGGTGAAATTTTGGTGGAAGAGCGGTCATCATGCTCCGCATGGAGAGTTATTTCTCAGAAGTTAGTTAATGTTTGCAAGGATCTCTGCAACCAGAAAGGAACTCTCAAGTTCTATTGTAACCATGTTAAGAATGAAACATGCTTACATCAATGGGATATAGGGAACGTAAAACCTCATACATACTTTACTTCGGTGGATAAATTTTGCGGTTCCCTTGGTTCAGTTGGCATCCCAGATGTAATTTATGCAGACAGTGATCTGGAAGGTATCTCTGAGGCTTTGAGAAAATGGTTGGGGCAGGATAGGTTTGGATTGGATGTTGAATTTGTTCAAGAAGTATTGGAACAGCTTCCTGGTGTTGAATCTCTGCAGTATGAACTTTTAAATAATAGAGATAACAGCTCGTCCTTGCCAACAGTAGGAAATGGTTTCTTAGTGGTTGAATGGAGAGGTGGATCAAAATATCAGGAAGAAGCACTTAAAGGTTTATACAGGAGGTCCAAAAAGGCAAGTTTGACTGAAAAAAGCTTTAAGGATGGTCGTCGTCCACCACTTGGGAAGCCTTTATGCTCTAGGGCTCCTGGCGAGCTCATTGGCGACATTTTTCAGGCTTGGGAGCTTTTAGAGCGATTTAACGAAGTTCTGGACCTGAAAGAACCATTGTCATTAGATGATCTTGAGAAGGAACTAATTAACCCTTGGTTTGATGGGTTGGATTTTCTTGAGAAATCTGAGAGGGACATGGATGAAAGTCAAGTTTTGATTTCCCAAGGAACTGATGGTAATTGCAGACCATTATTGTCCCCAAGAGTTGAAACTGGTCCATCAGGTTCCATGGAAAGTTCTCATGCGTTTATTCAAATGGAAACAGAAGCAATGAAAGAGGCCGCTCAAGTTAAGCTTGCATCTTTCACTTATGCCAGATGCTTTGGTGTAACTTTGACCAAGGCACATAATTCATTGCTGAGAGTGCTAATACGTGAATTGCTATCAAGGGTGGCTGTCCTGGTAGATCCAAATTCTGAACCCGGAGAAACACGAACAAGGCGGGGAAGAAGGAAAGATATGGATAGTGGTGTTTCTGCTAAACGAACCAAGCTCAACATGCTTCCTATTAATGAATTGACCTGGCCAGAATTAGCTCGTAGGTATATCTTGGCTTTTTTAACAATGGATGGCAACCTTGAGTCTGCAGAAATTACTGCCCGCGAAAGTGGTAAAGTATTTCGCTGCTTACGAGGTGATGGTGGTTTGCTGTGTGGTTCTCTTACCGGTGTGGCTGGGATGGAAGCAGATGCACAGCTGCTTGCAGAGGCTACAAAGAAAATTTTTGGTTCTTTGAGCAGAGACAGTGATGTACTAACCATGGAAGAAGAGTCTGATGCAAAGGGTGCTTCTGAGAAGAAATTGGCAAATGATGGTAATGTTCCTGAATGGGCTCAAATGCTAGAACCTGTCAGAAAGCTACCAACAAATGTAGGCACTCGAATCAGGAAGTGTGTTTATGATGCTCTGGGTAAGGATCCGCCAGAATGGGCAAAGAAAAAACTGGAACATTCAATCAGTAAGGAAGTGTACAAGGGCAATGCTTCTGGACCAACTAAGAAAGCAGTTCTTTCAGTTTTGGCTGATGTTGTGGGTGAAGGACTGCAATCAAATCCCAGTAAAGGACAGAAAAGGAAGATTGATATATCAATTTCTGACATTATGATGAAACGATGTCGCATTGTATTACGCCGTGCTGCTGCTGCAGATGATTCAAAGGTTTTTTGCAATTTGCTGGGAAGAAAATTGATTAATTCTTCAGATAATGACGATGAGGGGCTTCTTGGATCTCCAGCCATGGTGGCCCGCCCTCTAGACTTCCGCACTATTGACCTAAGATTAGCTGCTGGAGCTTATGGTGGATCTCATGAAGCTTTTCTTGAGGATGTTCGCGAGCTGTGGAACAATGTTCGTGTTGTTTTTGGGGATCAACCTGATTTACTCGAACTGGCTGAAAAATTATCCCAAAACTTTGAATCACTATATAATGAGGAGGTTGTCACCAATGTCCAAAAATTTATGGAGTATGCTAAACTGGAATGCTTAACTGCAGAAATGAGAAAGGAAGTTGATGATTTTATTGAGTCAATGAAAGAGACTCCAAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGATAGGGACGATGATAGTGTTTTACTATGTGATACTTGTGATGCTGAGTATCATACATATTGCTTAAACCCTCCCCTTGCAAGGATTCCTGAGGGAAACTGGTACTGTCCTTCCTGTGTTGATGGTAAACATGCAACTCAAGATGTTACAGAACGTACACAGGTTATTGGCAAATGCCGAAGTAAAAAATTCCAGGGTGAAGTTAATTCTCTTTACTTGGAATCCCTTACTCATTTATCAACTGTAATTGAAGAAAAAGAATACTGGGAGCATAGCTTGGGCGAGAGAACTTTCCTTCTTAAATTTTTATGTGATGAGTTGCTTAACTCTTCCATGATACGCCAGCACCTTGAGCAATGTTCAGAGTTGTCAGCTGAGTTACATCAGAAATTGCGTGCACATTCTGCAGAGTGGAAAAACCTGAAAACTAGAGAGGACATTTTATCTACAAAAGCAGCTAAAATTGATACTTTCTCATTAAATACTGCTGGAGAAGTTGGTCTTAGGGAAGGGGTTACTACTTTATTAACAAATACTGGTAAATGTCTGGTTCAGCCACATACTGCAGTTGACAATCCTAGTAATTTTGGGGTATTTGTTGATAGCCTGCCTTCAGAAGAGACCACCAAGGAGAAGTATAGGTTTGATAGTGTAGATAAAAGCATGTCCGTGACAAACTCAGATTCTGATAGCCAAAATATGAATTCCTTAGATGTAGAGGGACAATTTAGAAATGTCTCTGGTGCTGTGGAGTCTCAATCAACTGATAAATCCCCCAAATCTTTTCCATCACCAAATATGTCTCAAGAAATAAATGGTTCTGGTGGAGCAGCTCATGCCCAGGGTAACCACCAGAAATGTGAGGGGAGGGACACATCTACGCCTGTGACATGCCAGCAAGGTGGGGTGCCAGTTGATGCTTCACACACTGCTTTGAATGAGTCAGAACCCTATCACCTTGAGCTCAACGCCATCAAACGTGATATTTCAGTATTGCAGGACTCCATAACTAGTGTAGTATCGCAGCTGCTGAGGCTCTCTGTTCGCCGGGAGTTTTTGGGCATTGATTCCATCGGTCGATTGTATTGGGCTTCAACTTTGCCCGGAGGACGTTCACGAATAGTTGTTGATGCAAGTGCTGCACTGCTGCATGGAAGAGGAATACCATTTAGCAGAGACTATGTGGAGAAGTTTTCTGTTCTGCAGCATTCTTCACTATCTGAGAAGGATTCCTCTCAGCTTAGAAATGCTTTGGCCAATAGTTCACCATGGATTGCTTATGAAACTGATGCTGAAATTGAAGAGCTCTTAGGTTGGCTGGATGATAGTGATCCTAAAGAAAGGGAACTGAAAGATTCCATTATGCAGGGGCCAAGATCAAGATTCCAAGAGTTCCTTAATGCGCAGACTGAAGAGCAGGTCGAGGACCGAGGACCTATTTCTATGCCCATTAATAGAGAGAAAACAGTATCTAATTCTCTTGTTACAAAGGCGACATCCTTGCTGGAAAAGAAATATGGTCCCTTCTTCGAATGGGATATTGAGACATCAAAGAAGCAAAATAAAAAGTCCAGAACAACTAATGATGAAAAGTTGTTTAGGTGTGAGTGCCTAGAACCCATATGGTCCGATAGGAGACACTGCACATATTGTCACAAAACTGTTTCAAGTGATGTTGAATTTGATGGACACAATGATGGCAAGTGTAGTGCAGGTCTTCCGGTTGCAGAGAAGAATAGGAACAAAATTGGATCTTCTAAAGGAAAAGGAAACTTAAGATGTGATACCTCACGAGAGAAATTCAGAGCTGATACGGAAACAGCTGGAACCAAAGTTGGTGGTTGTTCTAAGATAAGCTCAAGATTGATTAAATTTTCAAATGAAGAATCCACATGCCCATTTAATTTTGAAGATATATGTTCCAAGTTTGAGACAAGTGAATCCAACAGGGAACTTGTCAAAGAAATAGGTCTTATTGGTTCGGATGGTATCCCATCCTTTGTTCCTTTTGTATCTCCTCTTGTTAGCGAGTATACACGATTTTCAACTCCAAAGGATGATGACATTATTGGTGTTTTGTCCAAACCAACGGAAACCCGTGGTTCTCAGGGAAACACTGATGGAGCTGGTGCATGTGTTGACCATAATTCTGGCATTTCTACTGGTAGGTTAGCTGCCAATGAAATCAATAAATCCAATAAATCATCCTCAGGAGAACAAAGAGATGGGAAATTCTCTTTTTGTGGTCCTGCTTCAGATATGGGAGTCGATGGCTGCTGTGTGGTTCCTTTGTCGTCATTGAAACCATTAGTTGGAAAGGTTTCTCACATTTTGAGGCAACTGAAGATTAATCTGCTTGATATGGATGCTGCACTTCCGGCATTTGCTCTGAGACCATCAAAGGCCGAGTCTGAGAGAAGACAGGCTTGGCGTGCATTTGTGAAATCTGCAGAGACTATATATGAGATGATTCAGGCGACATTTACCCTGGAAGATATGATTAAGACGGAGTACTTGAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCCAAAACTTCTACTTTGCCTTCCCTTGCGCTTCGCTTATACTCTCTTGATTTAGCCATTATATACGAGAAAACGCCCAATTCAAGTTTTACTGACAGCTCTGAACCTTCTGGCACAGCAGAAACGAGACCACCAATGAATGTGGATACAGAGAAATCCAAAGGAAACCGGAAGTCAAACAGGAAAAGGAAGGAATCAGATGGTTGA 6624 0.4358 MIMELPDSTGGERNLNAPPPPPQHNNHHQDARSGLGIDLNEIPSPSSLFAETLPDSVTVDVVRAYHDNPGPPPGAPAAVPSGGLANCAACSKPCPAAAGSHHHLVVCDGCERGFHLACAGIRGGGRQAASLEEWVCGECVAAGVKSKRWPLGVKQLLDINAPPPSEAEGDGVGDGDAQDLRKHTLGDNYFGANPFAAPVTYSNFYNGNATGFQKASGGLTHADRVGFEDILNHTQSITRRFEEALKDFISEQRGVLEEGWRVEFRQSVSSTELYAVYCAPDGKIFDSVYEVACYLGLMSGFNSVESELRNERSLASLSGSLSRKKKSTRSAVVNGFVEKRGTMMNSNCKDPSTEGLNVECATTRGNIPKPFESGRKDDGHSCPPQFEDELPLQFNDFFVLSLGKVDVRPSYHDVNLICPVGFKSCWHDKITGSLFTCEVLEGGDSGPIFRIRRSSCSEFPVPVGSTIISLSKFCQLVCQANEGERKTSASMDLDDGESIQMMLQDPCVPTENDVLSCSANFSIRDTHISDVLRPVTGSVQDNTINSLAGNLEFNDGIGEILVEERSSCSAWRVISQKLVNVCKDLCNQKGTLKFYCNHVKNETCLHQWDIGNVKPHTYFTSVDKFCGSLGSVGIPDVIYADSDLEGISEALRKWLGQDRFGLDVEFVQEVLEQLPGVESLQYELLNNRDNSSSLPTVGNGFLVVEWRGGSKYQEEALKGLYRRSKKASLTEKSFKDGRRPPLGKPLCSRAPGELIGDIFQAWELLERFNEVLDLKEPLSLDDLEKELINPWFDGLDFLEKSERDMDESQVLISQGTDGNCRPLLSPRVETGPSGSMESSHAFIQMETEAMKEAAQVKLASFTYARCFGVTLTKAHNSLLRVLIRELLSRVAVLVDPNSEPGETRTRRGRRKDMDSGVSAKRTKLNMLPINELTWPELARRYILAFLTMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADAQLLAEATKKIFGSLSRDSDVLTMEEESDAKGASEKKLANDGNVPEWAQMLEPVRKLPTNVGTRIRKCVYDALGKDPPEWAKKKLEHSISKEVYKGNASGPTKKAVLSVLADVVGEGLQSNPSKGQKRKIDISISDIMMKRCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPLDFRTIDLRLAAGAYGGSHEAFLEDVRELWNNVRVVFGDQPDLLELAEKLSQNFESLYNEEVVTNVQKFMEYAKLECLTAEMRKEVDDFIESMKETPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQDVTERTQVIGKCRSKKFQGEVNSLYLESLTHLSTVIEEKEYWEHSLGERTFLLKFLCDELLNSSMIRQHLEQCSELSAELHQKLRAHSAEWKNLKTREDILSTKAAKIDTFSLNTAGEVGLREGVTTLLTNTGKCLVQPHTAVDNPSNFGVFVDSLPSEETTKEKYRFDSVDKSMSVTNSDSDSQNMNSLDVEGQFRNVSGAVESQSTDKSPKSFPSPNMSQEINGSGGAAHAQGNHQKCEGRDTSTPVTCQQGGVPVDASHTALNESEPYHLELNAIKRDISVLQDSITSVVSQLLRLSVRREFLGIDSIGRLYWASTLPGGRSRIVVDASAALLHGRGIPFSRDYVEKFSVLQHSSLSEKDSSQLRNALANSSPWIAYETDAEIEELLGWLDDSDPKERELKDSIMQGPRSRFQEFLNAQTEEQVEDRGPISMPINREKTVSNSLVTKATSLLEKKYGPFFEWDIETSKKQNKKSRTTNDEKLFRCECLEPIWSDRRHCTYCHKTVSSDVEFDGHNDGKCSAGLPVAEKNRNKIGSSKGKGNLRCDTSREKFRADTETAGTKVGGCSKISSRLIKFSNEESTCPFNFEDICSKFETSESNRELVKEIGLIGSDGIPSFVPFVSPLVSEYTRFSTPKDDDIIGVLSKPTETRGSQGNTDGAGACVDHNSGISTGRLAANEINKSNKSSSGEQRDGKFSFCGPASDMGVDGCCVVPLSSLKPLVGKVSHILRQLKINLLDMDAALPAFALRPSKAESERRQAWRAFVKSAETIYEMIQATFTLEDMIKTEYLRNDWWYWSSFSAAAKTSTLPSLALRLYSLDLAIIYEKTPNSSFTDSSEPSGTAETRPPMNVDTEKSKGNRKSNRKRKESDG 2207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01771 2207 ProSiteProfiles Zinc finger PHD-type profile. 1279 1329 IPR019787 -
Phco5g01771 2207 SUPERFAMILY FYVE/PHD zinc finger 85 151 IPR011011 -
Phco5g01771 2207 ProSitePatterns Zinc finger PHD-type signature. 1282 1326 IPR019786 -
Phco5g01771 2207 ProSiteProfiles FYR domain FYRC motif profile. 612 689 IPR003889 GO:0005634
Phco5g01771 2207 MobiDBLite consensus disorder prediction 1536 1566 - -
Phco5g01771 2207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 145 IPR013083 -
Phco5g01771 2207 ProSitePatterns Zinc finger PHD-type signature. 87 139 IPR019786 -
Phco5g01771 2207 MobiDBLite consensus disorder prediction 2165 2207 - -
Phco5g01771 2207 CDD PHD_SF 87 139 - -
Phco5g01771 2207 Pfam PHD-finger 1281 1327 IPR019787 -
Phco5g01771 2207 MobiDBLite consensus disorder prediction 897 917 - -
Phco5g01771 2207 Gene3D - 1122 1246 IPR036427 GO:0005515
Phco5g01771 2207 Pfam Methyl-CpG binding domain 247 298 IPR001739 GO:0003677
Phco5g01771 2207 PANTHER OS02G0192300 PROTEIN 22 2203 - -
Phco5g01771 2207 MobiDBLite consensus disorder prediction 1 37 - -
Phco5g01771 2207 Pfam Bromodomain 1170 1225 IPR001487 GO:0005515
Phco5g01771 2207 ProSiteProfiles Bromodomain profile. 1172 1220 IPR001487 GO:0005515
Phco5g01771 2207 SMART PHD_3 1281 1327 IPR001965 -
Phco5g01771 2207 SMART PHD_3 86 140 IPR001965 -
Phco5g01771 2207 MobiDBLite consensus disorder prediction 1536 1583 - -
Phco5g01771 2207 MobiDBLite consensus disorder prediction 2186 2207 - -
Phco5g01771 2207 CDD PHD1_Lid2p_like 1281 1326 - -
Phco5g01771 2207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1281 1328 IPR013083 -
Phco5g01771 2207 MobiDBLite consensus disorder prediction 2165 2185 - -
Phco5g01771 2207 ProSiteProfiles Zinc finger PHD-type profile. 84 142 IPR019787 -
Phco5g01771 2207 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1361 1405 IPR028942 -
Phco5g01771 2207 SUPERFAMILY FYVE/PHD zinc finger 1270 1331 IPR011011 -
Phco5g01771 2207 CDD Bromodomain 1127 1234 - -
Phco5g01771 2207 Gene3D - 390 527 - -
Phco5g01771 2207 ProSiteProfiles FYR domain FYRN motif profile. 389 442 IPR003888 GO:0005634
Phco5g01771 2207 MobiDBLite consensus disorder prediction 900 917 - -
Phco5g01771 2207 SUPERFAMILY Bromodomain 1116 1236 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01771 Phco-Chr5 53781939 53794928 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco5g01771 Bromodomain 4.9e-05 No_clan