Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01751 ATGAGCCCTAAAATCCCCTTTTACTTCCTCGCCCAAGGCGGATTGGAGGAGGAGATCTGCGATGCCGTGCTTGATCTAGGGTTTCCCCCTTCTGCGGTGGTTCCAAATCTAGGGTTTCGAGGACGAGGCGTGCGAATTCGGTTTCGAATTGATGTTTCTTTTCAGGGACGAAGCTGGGATCGACACGGAAGATGGAGGATTATGCATGGGTGTGGTGGTGACCAGTGGAAACACAATCGGCACATGTGGCCTGTACCTGCTAACGCGACCACTGTAGCCATCGATTCTTCACCGTCTCAATTTATATGCAAAGATGGACGCAAGATTCGCGCTGGTGATTGTGCACTCTTCAAGCCACCTAGGGACTCCCCTCCTTTTATTGGAATAATTCGCAAGTTATCGTATGATAAACAAGAAAGTCCAAGTTTAGAAGTGCATTGGCTTTACCGACCTGCTGATTTGAAACTTGCTAAAGGAATTGTGCTGGAAGCTGCTCCGAACGAAGTTTTTTACTCCTTTCACAAGGATGAAACACCTGCTGCATCATTACTCCATCCGTGTAAAGTCGCATTTCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTCGACGAGTTTATGACATTGAGAACAACTGTTTATGGTGGCTAACTGATAAGGACTACCTTAATGAACAACAGGAAGAAGTTAACCAGCTATTAGATAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCAAAACCCTTGAATGGTCCAACATCAACACAGTCATTGAAATCTGGTTCTGACAACATACAAAATAGTTCTTCCTTTGGTGCACAGGGTAAGGGTAAAAAGAGGGAGCGGGATCAGGGTTCTGATTCATCTAAAAAGGAGCGGTTATTTAAGATTGAAGATGGAGACTCTGGTCAGTTTAGACCGGAGAGCATGTTAAAGTCTGAGATTGCTAAAATAACTGATAAAGGTGGGCTTGTGGACTTTGAAGGAGTTGAAAAACTGGTACAGCTTATGCAGCCTGACAGCGCTGATAAAAAAATAGATTTACCTGGGCGGATAATGCTTGTCGATGTAATTGCACTTACAGACCGGTATGATTGTCTGGGTTGGTTTGTACAGCTCAGGGGTTTGCCTGTGTTGGATGAATGGCTGCAGGAGGTCCATAAGGGCAAAATTGGTGATGGGAATATGCCCAAAGAAAGTGATAAGTCTGTTGATGAATTTCTGTTAGCTTTACTGCGTGCATTGGATAAGCTTCCTGTGAACCTTCATGCACTGCAGACCTGTAATGTTGGAAAGTCTGTCAATCATTTACGCACCCACAAAAATGCTGAAATTCAGAGGAAAGCTAGGAGTTTAGTAGACACATGGAAGAGGCGTGTGGAAGCGGAAATGAACATGAATGATTCAAAGTCTGGATCGAACCGTGCTGTTTCTTGGCCAGCAAAGCCAGCAAACTCCGAGTCTCCTCATGTTGGAAATAGGAAAACAGGGGGATCCTCTGATAGCGTTGTGAAGAGCACTCCTATTCAACCCTCATTATCTAAAAGTTCCCAATCTAAGTTAAGTTCTGGAGAAGCTTTGTCCAAGTCTTCATCTCCTGGCTCTACTAAATCATTGACTACCTCAGTGGGCATGAACTCAAAAGATCAAAACAGTAAAGTCTTTGTTGGAGCTGCAACGGCAGATCTGCCTCTGACACCTATCAAAGAGGAGAGGAGCAGCAGTTCTAGTCAATCTCAAAATAACAGTATAACTTGTTCTAGTGAACATGCTAAAACTATTGGTTCCTGCAGGGAAGATGCGAAGAGTTCCACTGCAGTGTCAATGAGTGCGAGTAAAATTCATGGTTGTGCATCTCGAACTCGCAAGTCAAGCAATGGTATACATGGGGCTGGTGCAGTGGGTCAGAAGGAGCACAACTCTGCAAAAAACTCAACCAGAAATTCACCGTCTGAGAAAGTTTCACCAACTCGAGCATCCCATGAAAAATCAGTTGACCAGCCCCTTGCTGATCAAGGGAATAACCAGCGATTGATTCTCAGGTTGCCAAACACTGGTCGCAGTCCTTCAAGAGGAGCTAGCGGGGGCTCTTTTGAAGAACCAGCAACAACGAGCAGCAAAGCTTTGTCTCCTGCTGACCTGAATGATAGTCAGGACAGAAGATTGAAAACTAAGACCGAGTGTTTGCTGACCCATGTGTCAAATATGATGAATGAGTCTTGTGATGCTAATGAAGCTTTGATTGGTGATGAAAATAAGGGCACTCCAATAGTTGATGAGCGATGCAGGGCAATTGAAGATAGTGATAAGGTATTAGAAACATCAAAACCAACTAGTTTGCCATCTGGATTTGTTTCCAGATCAGGGCAGACTTATGATGCTTCTTTAAGCCCCATGAATGCATTGGTTGAAAGCTGTGTAAAATTTTCTGAAGCAAGTTCATCAGTTTCCCATGGAGATGATGGGATGAACCTACTTGCTACTGTGGCTGCGGGGGAAATATCCAGATCGGAAAATGCATCACCTGTGCCATCCCCTGAGAGAAAGTCTCCTGCAGCAGATGAACAGTGCTCAGGCAATGATTTGAAGTTAAAGCATTCTGGTGAAGCAGCTGTTCGCACTCTTTCAGAGTTGAATGGTAGGGCTACAGGAGAGCATCCTTTGAATACAGTTGATTCATTGCAGATAAAAAATGAATTGAGGCATCCTGCCATGACGGTGTCACGTGATTTTCCAGGGGATGGTGAAACCATTTCATCTTCCCACGATACTCGAATAAATGTCTCCTCTACAGATTTGTTACAAAATGTTGAAGGTCCATGCTTACGGCCTGAAACCATAGAAGATGATTCTGTAACTATACTGACTCCTAAAAAGGAGAGTAATGCAGACGCTGGAGTTTCGGACTCTAAACTAAAGCCAAGGGCCTCCTCTTTTGATGATGATCAGAAGGTTGATCACATGAATGAGGAGATCATTGAGAACGAGAAAATGTTGGTTTCAAAACCTTTAAATGTTGAGTCAGAAAACGAATCAGGTGAAAAGCAGCCTGATTTAACTTCAAGTGTGGATAATGAGAACCAGATTAGTGTGGAGAAAGCAACAGGTACAGGAATACTAGCGCAAAAGACCTCTCCAATTGCTGAAAACTGTGAGTCTATATATTTAAAATTTAAAAAGGAGTTACCTGCTTCTGGTAATGCTTTAATGGTACCCATGGATGAAAATGCTGATGACATGAAGTCAGTAGTGATTGAGCCTGAAGAAAGACGAATGGAGCAGGATTCTTCTTCTCCAGATGATTCTAATGATTGTGCTGAAGATAATATGGGCAGAAAAGAGGCCATTGGTCAGTGTTCTGGTTCATCATCAGTTCAGCCAGATTTACAAACAATGTCTAGGAAAGAGAATGAAGTGTCCAAATCATGTGAGCAAAAGCTAGATTCAAATCCGTCTGAAGTTTCAGGAGAGAGGCATGCATGCTCTGCAGCTGGTGCTGATGCAGCTGTAAAACTTGACTTTGATTTAAATGAAGGCTTTCCTTTTGATGACGTAAGCCAAGGGGAGATTGCCAGACAGGAAGATCCTATCACATCATCTGCAGTTCATGTTCCTTGCCCGTTGCCTTTTCCCATTTCGTCCATCTCTGGTGGCTTCCACCCTTCAATTACAGTGGCATCTGCTGCTAAAGGGCCGGTTATTCCACCAGAAAACCCATTGAGGATGAAGGGGGAGCTTGGATGGAAAGGATCTGCTGCTACCAGTGCATTTCGACCAGCTGAACCTAGGAAAAATGCTGAGATGCAGTCCTCTACTAATGATATTACTTCTGTTGAAGTCACTTCTATCAAACAAAGCCGTGCTCCCTTAGATTTTGACTTAAATGTGGCTGATGAAAGATGTTTCGAGGATGTTGGTTCACATGGTTCTTTAGAATCTGGACAACATGATCGTAGTGTGGGACTCGATCTTGATTTAAACAGAGTTGATGACACTCCTGAAATTGGTTCTTTCTCTATAAGCAAACTGGATATTCCTTCTTTACCAAGCAAGCCGTCATTGTCTAGTGGGTTGTCTAATGGTGGAAGTGTCTCAAGAGACTTTGACTTAAATAATGGGCTTGGCCTTGAAGAAGTTGGTAGTGAAGTCCCTGCACGTAGTCAGCTGATGAAAAACAGTGTACCGTTTCCAAGTGCTGTTCATAGCGCTAGAACAAACAATGCTGAATATGGGAGTTATTCTGCGTGGTTTCCTCCAGGAAATTCCTATCCTGCAATTACTGTCCCACCACTTCTGCCTGGTAGAGGGGAGCAGAGTTATGTCACTGGTGCTGGGGCACAACGAATAATGGGTCCTACAGGTAGCAGTCCTTTTGGTCCTGAAATCTACAGGGGATCAGTGCTTTCGTCCTCTCCGGCTGTTGCTTATCCATCCACTACAGCTTTTCCATATCCTGGATTTCCATTTGAAACCAATTTTCCATTATCCTCAAACTCCTTTTCGGGGTCAACTGCATTTATGGATTCCTCGAATGTGGGCGGGCTATGTTTTCCTCCCATGACTTCACAGCCAGTTGGGCCTGGTGGTGTTGTTTCATCCACGTATCCCCGTCCATATGTTATGAGTCTTCCTGGTGGTACTAGTAATGTGATACCTGACAGCAGAAAATGGGGAAGTCAAAGTCTGGATCTTAATTCAGGCCCTGGTGTGGCAGATACAGAACGGAGGGATGATAGATTGCCTTCAGGATTGAGGCAAATGTCTATTCGGTTATAA 4806 0.4407 MSPKIPFYFLAQGGLEEEICDAVLDLGFPPSAVVPNLGFRGRGVRIRFRIDVSFQGRSWDRHGRWRIMHGCGGDQWKHNRHMWPVPANATTVAIDSSPSQFICKDGRKIRAGDCALFKPPRDSPPFIGIIRKLSYDKQESPSLEVHWLYRPADLKLAKGIVLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYLNEQQEEVNQLLDKTKLEMHGAVQSGGRSPKPLNGPTSTQSLKSGSDNIQNSSSFGAQGKGKKRERDQGSDSSKKERLFKIEDGDSGQFRPESMLKSEIAKITDKGGLVDFEGVEKLVQLMQPDSADKKIDLPGRIMLVDVIALTDRYDCLGWFVQLRGLPVLDEWLQEVHKGKIGDGNMPKESDKSVDEFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNAEIQRKARSLVDTWKRRVEAEMNMNDSKSGSNRAVSWPAKPANSESPHVGNRKTGGSSDSVVKSTPIQPSLSKSSQSKLSSGEALSKSSSPGSTKSLTTSVGMNSKDQNSKVFVGAATADLPLTPIKEERSSSSSQSQNNSITCSSEHAKTIGSCREDAKSSTAVSMSASKIHGCASRTRKSSNGIHGAGAVGQKEHNSAKNSTRNSPSEKVSPTRASHEKSVDQPLADQGNNQRLILRLPNTGRSPSRGASGGSFEEPATTSSKALSPADLNDSQDRRLKTKTECLLTHVSNMMNESCDANEALIGDENKGTPIVDERCRAIEDSDKVLETSKPTSLPSGFVSRSGQTYDASLSPMNALVESCVKFSEASSSVSHGDDGMNLLATVAAGEISRSENASPVPSPERKSPAADEQCSGNDLKLKHSGEAAVRTLSELNGRATGEHPLNTVDSLQIKNELRHPAMTVSRDFPGDGETISSSHDTRINVSSTDLLQNVEGPCLRPETIEDDSVTILTPKKESNADAGVSDSKLKPRASSFDDDQKVDHMNEEIIENEKMLVSKPLNVESENESGEKQPDLTSSVDNENQISVEKATGTGILAQKTSPIAENCESIYLKFKKELPASGNALMVPMDENADDMKSVVIEPEERRMEQDSSSPDDSNDCAEDNMGRKEAIGQCSGSSSVQPDLQTMSRKENEVSKSCEQKLDSNPSEVSGERHACSAAGADAAVKLDFDLNEGFPFDDVSQGEIARQEDPITSSAVHVPCPLPFPISSISGGFHPSITVASAAKGPVIPPENPLRMKGELGWKGSAATSAFRPAEPRKNAEMQSSTNDITSVEVTSIKQSRAPLDFDLNVADERCFEDVGSHGSLESGQHDRSVGLDLDLNRVDDTPEIGSFSISKLDIPSLPSKPSLSSGLSNGGSVSRDFDLNNGLGLEEVGSEVPARSQLMKNSVPFPSAVHSARTNNAEYGSYSAWFPPGNSYPAITVPPLLPGRGEQSYVTGAGAQRIMGPTGSSPFGPEIYRGSVLSSSPAVAYPSTTAFPYPGFPFETNFPLSSNSFSGSTAFMDSSNVGGLCFPPMTSQPVGPGGVVSSTYPRPYVMSLPGGTSNVIPDSRKWGSQSLDLNSGPGVADTERRDDRLPSGLRQMSIRL 1601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01751 1601 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 338 474 IPR035441 -
Phco5g01751 1601 MobiDBLite consensus disorder prediction 967 991 - -
Phco5g01751 1601 CDD TFIIS_I 395 471 - -
Phco5g01751 1601 MobiDBLite consensus disorder prediction 1097 1166 - -
Phco5g01751 1601 Pfam BAH domain 109 214 IPR001025 GO:0003682
Phco5g01751 1601 MobiDBLite consensus disorder prediction 580 636 - -
Phco5g01751 1601 MobiDBLite consensus disorder prediction 580 730 - -
Phco5g01751 1601 MobiDBLite consensus disorder prediction 499 557 - -
Phco5g01751 1601 ProSiteProfiles TFIIS N-terminal domain profile. 387 473 IPR017923 -
Phco5g01751 1601 MobiDBLite consensus disorder prediction 1563 1577 - -
Phco5g01751 1601 MobiDBLite consensus disorder prediction 1126 1143 - -
Phco5g01751 1601 SMART TFS2_5 393 472 IPR003617 GO:0005634
Phco5g01751 1601 MobiDBLite consensus disorder prediction 1263 1283 - -
Phco5g01751 1601 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 68 1599 - -
Phco5g01751 1601 Pfam TFIIS helical bundle-like domain 421 470 IPR017923 -
Phco5g01751 1601 MobiDBLite consensus disorder prediction 285 315 - -
Phco5g01751 1601 MobiDBLite consensus disorder prediction 1563 1601 - -
Phco5g01751 1601 MobiDBLite consensus disorder prediction 677 723 - -
Phco5g01751 1601 MobiDBLite consensus disorder prediction 473 557 - -
Phco5g01751 1601 ProSiteProfiles BAH domain profile. 107 222 IPR001025 GO:0003682
Phco5g01751 1601 MobiDBLite consensus disorder prediction 256 284 - -
Phco5g01751 1601 MobiDBLite consensus disorder prediction 648 665 - -
Phco5g01751 1601 Gene3D - 91 323 IPR043151 -
Phco5g01751 1601 MobiDBLite consensus disorder prediction 245 316 - -
Phco5g01751 1601 MobiDBLite consensus disorder prediction 845 870 - -
Phco5g01751 1601 MobiDBLite consensus disorder prediction 1016 1035 - -
Phco5g01751 1601 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 375 484 IPR035441 -
Phco5g01751 1601 MobiDBLite consensus disorder prediction 476 491 - -
Phco5g01751 1601 SMART BAH_4 107 222 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01751 Phco-Chr5 53625823 53634163 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Phco5g01751 BAH 3.4e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01751 5 53625823 53634163 Phco7g02162 7 38343290 38349994 ECH
Phco5g01751 5 53625823 53634163 Phco5g01751 5 53625823 53634163 ECH