Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01711 ATGAAGGGTGATGAGAGGGGGATGAAGAGGGCAAGGGATGATATATACTCAGCCTCTGCCTCTCAATTCAAACGCCCCTTTTCTTCGTCGCGTGCTGATTCCTATGGACAAAATCAAGTCCCTGGAAGTGGAGGGGGAGGGGGTGGGGGAGGTAGCAATGGAGGTGGTGTTGGTGGGGGAGCAACTACTTCACAGAAACTGACTACCAATGATGCCTTATCCTATTTGAAGGAAGTCAAAGACATGTTTCAGGATCAAAGAGAGAAGTACGACATGTTCCTTGAGGTCATGAAAGATTTCAAAGCTCAAAGGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAATTGTTCAAAGGGCACAACAATTTGATTTTTGGATTTAACACATTCCTGCCAAAAGGTTATGAGATAACACTTGATGAGGATGAGGCTCCTCCAAAGAAAACAGTTGAATTTGAAGAAGCAATCAGTTTTGTGAACAAGATAAAGAAGCGGTTCCAAAGTGATGAGCATGTTTACAAATCATTCTTGGACATTTTAAACATGTATCGCAAAGAGCACAAGGACATTGGCGAGGTTTATAGTGAGGTTGCTACCCTCTTCAAGGACCATCGAGATTTGCTAGAGGAGTTCACTAGATTCTTACCAGATACTTCTGCTGCACCTTCCACACAGCATGCTCCATATAGTCGAAATTCATTGCAGCGCTTTAATGAGTGGAGTTCCACAGCCCCAATGATGCGCCAAATGCCACCAGACAAGGCACAACGCTATCGAAGAGACAGACTTCCTTCCCATGATCATGATATGAGTGCTGAACGCCCTGAGATGGATGATGACAAAACAATGTTGAACATACACAAGGAGAGGAAGCGAGAAAGTAGGGATAGGAGAATGCGTGATCAGGAAGAGAGAGAACAAGATCTTGATAACAGCAGGGATTTGAACTTGCAACGCTTTCCTGACAAAAAGAAATCTGTCAAGAAGGCTGAAGGTTTTGGAATGGCTTCTGACTTTCCTTCTTATGAAGACAAAGATACCTTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGATTACCAAACATTCCTGAAGTGCCTTCATATTTTCAGCAATGGAATAATTAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTGCTTGGAAAGCATTCAGATCTTATGGATGAATTCAATGATTTCCTGGAGCGTTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCACTATCTACTGATGTTCATTTAGCAAGACCATCAAAGTTGGAGGACAAAGACAGAGAGCACAAACGTGATATGGATGGGGCTAAAGAGAAGGAAAGATACAAGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGCAAACGTTGTACTCCCAGCTACCGGCTTTTGCCTGCTGATTATCCAATTCCTACAGCCAGTCAGAGATCTGAGCTTGGTGCTCAGGTATTGAATGACCACTGGGTATCTGTGACTTCTGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGAAATCAGTATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATATGAGCTGGACATGTTATTAGAGTCTGTGAGTTCGGCTGCTAAACGAGCAGAGGAATTGTATAATAACATTAATGAAAATAAAATCAGTGTGGAGACTATGAATCGTATTGAAGAGCACTTTACTGTTCTAAATTTAAGGTGCATTGAACGATTGTATGGTGATCATGGCCTTGATGTAATAGACATATTGCGTAAAAACCCAACCCATGCCCTTCCTGTAATATTGACTCGACTGAAGCAGAAGCAAGAGGAGTGGAGTAGGTGCCGTTCAGATTTCAATAAAGTATGGGCTGAAATTTATGCTAAAAATCACTACAAATCACTGGATCACCGTAGCTTCTATTTTAAACAACAAGATTCAAAGAATTTGAGCACAAAATCCTTGGTTGCTGAGATTAAGGAAATTAAAGAAAAACAGCAGAAAGAAGATGATATTATTCAGTCTATTGCGGCTGGAAATAAACAGCCTCTAATTCCTCATCTGGAATTTGAATATTCTGATGCTGCTGGTGTTCATGAAGACCTGTATAAACTTGTTCGTTATTCATGCGAGGAGTTATTCTCAAGTAAAGAGTTGTTACATAAAATTATGAGGCTCTGGAGTACCTTCCTGGAGCCAATGCTTGGTGTTCCTTCCCAGTCTCATGCAATAGAAAGGGCGGAGGATAGAAAAACTGGGCATAATGTTCGCAATTTTGGTGTACCAAGCGTAGGGGGTGACAGAAGCCCTCATGGAGACTCTCTTTCAATGAATTCAAGGTTACCGAAATCTGATAAGAATGAAGCTGATGGTAGACTAACTGAAGCAAAGAATGTTCACCGGACTAGTATAGCAACCAATGATAAAGAAAATGGATCTATTGGTGGTGAACATGGTTGTAGAGATGATCCATTAATGGATAAGGGACTGAAAAATCTAGAATGCAATGATAAAGCATCCGGATTTAGCAAACCATTTACCTCTGATGATCAAGGAGCTAAAAACAGTGTATCAATTGCAATTAGAGGAGAAAACAGCCTGAACAGAACCAGCTTAGATGTATCACCAGCTTGCACCCTTACTCCCTCACGACCTACTGATGTTGATGATTCTGTAGCCAAATCTCAGGTTGCTAATGTACCATTGGTGGAGGGATGTGACATGGCAACTCCAGTTCCTGTGGTGGCCAATGGTGTTTTAAGTGAGAGCAGTAAAGTTAAAACTCATGATGAATCTGCTGGACCTTGCAAAATTGAAAAGGAAGAGGGAGAATTATCACCAAATGGCGACTCAGAGGAGGATAACTTTGTTGCCTATGGAGATTCAAATCTGCAGTCAATGGCTAAATCAAAACACAACACTGAAAGAAGGAAATATCAGTCTAGAAATGGAGAGGATGAATGTTGTCCTGAGGCTGGAGGTGACAATGATGCGGATGCTGACGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCTGGCAGTGAATCTGCTGGTGATGAATGCTTTCGAGAAGATCATGAAGAGGAGGAAGACATAGAACAAGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATTGGTGATGCACAAGCTGGGGGAGATGGCACATCTTTGCCATTGTCAGAGAGGTTCCTTTCATCTGTGAAACCTCTCACAAAGCATGTATCAGCAGTTTCATTTGTTGAAGAAATGAAGGACTCAAGGGTGTTCTATGGAAATGACGACTTCTATGTGCTTTTTAGACTTCATCAAACTCTTTACGAGAGGATCTTATCGGCGAAAACAAATTCAATGAATGCAGAAATAAAATGGAAAACAAAAGATGCTAGTTTACCAGATCCTTATTCAAGATTTATGAATGCATTGTACAACTTGCTTGATGGATCTGCTGAAAATGCAAAGTTTGAAGATGAATGCCGAGCAATAATTGGGAACCAGTCATATGTGTTATTCACCTTGGACAAGTTAATATACAAATTGGTTAGACAGCTTCAAACTGTCGCAACAGATGATGTGGACAGTAAGCTTCTCCAATTATACGAATATGAAAAGTCTCGGAAGCCTGGGAAGTTAAATGATTCTGTATATCATGCAAATGCTCATGTCATCCTTCATGAGGATAATATATATCGGATACAATGTTCCTCTAGCCCCTCACGGTTATCTATCCAGTTTATGGACAATATGAATGAAAAGCCTGAATTGTTTGCCGTTTCTATTGATCCAAATTTCTCCTTTTATCTGCACAATGATTTTCTGTCTGTCTTTCCCGGCAAAAAGGAACCCCATGGCATCATACTGCATAGAAACAAACGCAAATATGGAAACTTAGATGAGCTGTCTGCAATATGCTCTGCAATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGCAAGATAGCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGATTTCTTCTTCCGGCCGAGAAAGAAGAGACGAACGCCAGCAGGGACCACAACCTCCCAGTTTCGTAGGGATAGAGAGGAAAGATTCCGCAAATTGTTGGCATGCTCATAA 4203 0.4097 MKGDERGMKRARDDIYSASASQFKRPFSSSRADSYGQNQVPGSGGGGGGGGSNGGGVGGGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPYSRNSLQRFNEWSSTAPMMRQMPPDKAQRYRRDRLPSHDHDMSAERPEMDDDKTMLNIHKERKRESRDRRMRDQEEREQDLDNSRDLNLQRFPDKKKSVKKAEGFGMASDFPSYEDKDTLKSMYSQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDVHLARPSKLEDKDREHKRDMDGAKEKERYKEKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKRAEELYNNINENKISVETMNRIEEHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDIIQSIAAGNKQPLIPHLEFEYSDAAGVHEDLYKLVRYSCEELFSSKELLHKIMRLWSTFLEPMLGVPSQSHAIERAEDRKTGHNVRNFGVPSVGGDRSPHGDSLSMNSRLPKSDKNEADGRLTEAKNVHRTSIATNDKENGSIGGEHGCRDDPLMDKGLKNLECNDKASGFSKPFTSDDQGAKNSVSIAIRGENSLNRTSLDVSPACTLTPSRPTDVDDSVAKSQVANVPLVEGCDMATPVPVVANGVLSESSKVKTHDESAGPCKIEKEEGELSPNGDSEEDNFVAYGDSNLQSMAKSKHNTERRKYQSRNGEDECCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEQDDVDGKAESEGEAEGIGDAQAGGDGTSLPLSERFLSSVKPLTKHVSAVSFVEEMKDSRVFYGNDDFYVLFRLHQTLYERILSAKTNSMNAEIKWKTKDASLPDPYSRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDDVDSKLLQLYEYEKSRKPGKLNDSVYHANAHVILHEDNIYRIQCSSSPSRLSIQFMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPGKKEPHGIILHRNKRKYGNLDELSAICSAMEGVKVINGLECKIACNSSKISYVLDTQDFFFRPRKKRRTPAGTTTSQFRRDREERFRKLLACS 1400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01711 1400 MobiDBLite consensus disorder prediction 1012 1032 - -
Phco5g01711 1400 MobiDBLite consensus disorder prediction 805 819 - -
Phco5g01711 1400 SUPERFAMILY PAH2 domain 63 134 IPR036600 GO:0006355
Phco5g01711 1400 SUPERFAMILY PAH2 domain 352 418 IPR036600 GO:0006355
Phco5g01711 1400 SMART hdac_interact2seq4b 482 582 IPR013194 -
Phco5g01711 1400 FunFam Paired amphipathic helix SIN3-like protein 148 219 - -
Phco5g01711 1400 Gene3D Paired amphipathic helix 148 220 IPR036600 GO:0006355
Phco5g01711 1400 MobiDBLite consensus disorder prediction 776 847 - -
Phco5g01711 1400 MobiDBLite consensus disorder prediction 1 63 - -
Phco5g01711 1400 ProSiteProfiles PAH domain profile. 149 219 IPR003822 GO:0006355
Phco5g01711 1400 Gene3D Paired amphipathic helix 347 420 IPR036600 GO:0006355
Phco5g01711 1400 MobiDBLite consensus disorder prediction 21 41 - -
Phco5g01711 1400 MobiDBLite consensus disorder prediction 945 1088 - -
Phco5g01711 1400 Coils Coil 555 575 - -
Phco5g01711 1400 Pfam Sin3 family co-repressor 484 576 IPR013194 -
Phco5g01711 1400 PANTHER SIN3B-RELATED 65 1262 IPR039774 GO:0003714
Phco5g01711 1400 MobiDBLite consensus disorder prediction 946 967 - -
Phco5g01711 1400 ProSiteProfiles PAH domain profile. 349 418 IPR003822 GO:0006355
Phco5g01711 1400 SUPERFAMILY PAH2 domain 146 218 IPR036600 GO:0006355
Phco5g01711 1400 MobiDBLite consensus disorder prediction 242 320 - -
Phco5g01711 1400 ProSiteProfiles PAH domain profile. 65 135 IPR003822 GO:0006355
Phco5g01711 1400 Pfam Paired amphipathic helix repeat 371 415 IPR003822 GO:0006355
Phco5g01711 1400 Pfam Paired amphipathic helix repeat 88 132 IPR003822 GO:0006355
Phco5g01711 1400 Pfam Paired amphipathic helix repeat 172 216 IPR003822 GO:0006355
Phco5g01711 1400 MobiDBLite consensus disorder prediction 254 320 - -
Phco5g01711 1400 Gene3D Paired amphipathic helix 71 133 IPR036600 GO:0006355
Phco5g01711 1400 Pfam C-terminal domain of Sin3a protein 1120 1367 IPR031693 -
Phco5g01711 1400 MobiDBLite consensus disorder prediction 992 1011 - -
Phco5g01711 1400 FunFam Paired amphipathic helix protein SIN3 346 420 - -
Phco5g01711 1400 FunFam Paired amphipathic helix protein Sin3 71 133 - -
Phco5g01711 1400 MobiDBLite consensus disorder prediction 1048 1068 - -
Phco5g01711 1400 MobiDBLite consensus disorder prediction 442 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01711 Phco-Chr5 53243911 53256343 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco5g01711 Sin3a_C 1.1e-54 No_clan