Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01710 ATGCATGCGAGTACAGTAGCTAGGGGACAATACCATGTAATGGGAGAAGGTGACGAGAATATTGGTAAAGCAAGTAACTCATGGAGGAGGATGCGCGGGAGGACTCGTAGAGGAGGTGTTGCTCGGGTGAGGGTCGCCGTTGAGGAAGGTTTCTGTGAATGTGACTACAGACAAAACCAACTCCCTCAAAGTACTCCCCAGAGACCTAGTATGGATGATGCCTTACATTTTCTGAATAGAGTCAAAGCTGTGTTTTGGAACGAAAAGGAGAAGTATGACATGCTGATTCAGATCCTGAAAGATTACAAGGCTGAAAGGATTACCTCTGAGGTTGTCGCTGCGAGGGTGAAAGAGTTACTGAAAGGGCACTGCAGTTTGATTCTGAGATTCAACACTTTCTTGCCAAAGGAGCATGAGATCAAACTTAAGGACGAACCTTCTCAAGAACTAGTCCGTTTAGTTGACGGCATAAGGGAACGATTCAAAAATGATGACCATCTTTACCAATCATTCTTGGTGAGTATAAAAACGTACAAAGAAGATAAGAGAAAGACAACTTGTGATCTTTATGGTGAGCTTGCTGTCATTTTCAAGGACCACCAAGATCTGCTGAAGGAGTTCACCAGATTATTTCCTAATTATGACGGCGTTGAAGAGAATGTTGAGGATGAAAAGCCAAGACTGAGCATTCCCAAGTGGAAGCAAACATGTTTAGGTTGTTTCATTGCACTGTTGTTTTGTACAATTATGTGGTCAATCATATTTGTTTATTTTCTCTCATGTCATGATGAGATAACAAGGAAAACAAAGATGTATTCGTTTTGTTTCCTAGGATTGGTTGTCATCTCCTTCATTGCTAATATCTTCCATCAACCCTATAATATTATTTGCATGAGAGAGTATATAACCAAAAGGATTTCAAAGATTCTTACCATTGGAGATGGATGGTTCGTTCAGAAGGAAAATTTCAGATGTGATCTTTGCAATAGAGTTGTCAAAGAAAATGTGGTTATGCCTTTAATGGGAGAAAAAATGGGTGTAGTGGTTCAAACAATTTGTGCAGTGATAATAGGTTTCACTGTGGGTCTTATGTTTGCATGGAGAGTAGCCATTGCAATGACAGTTGTTCAACTTATTATCATTGTTTGCTTCAACATAAGAGGTGTCCTCAAGATCATGCCCAGTAAGAACATCAAGATCCATGATGATTGA 1212 0.4002 MHASTVARGQYHVMGEGDENIGKASNSWRRMRGRTRRGGVARVRVAVEEGFCECDYRQNQLPQSTPQRPSMDDALHFLNRVKAVFWNEKEKYDMLIQILKDYKAERITSEVVAARVKELLKGHCSLILRFNTFLPKEHEIKLKDEPSQELVRLVDGIRERFKNDDHLYQSFLVSIKTYKEDKRKTTCDLYGELAVIFKDHQDLLKEFTRLFPNYDGVEENVEDEKPRLSIPKWKQTCLGCFIALLFCTIMWSIIFVYFLSCHDEITRKTKMYSFCFLGLVVISFIANIFHQPYNIICMREYITKRISKILTIGDGWFVQKENFRCDLCNRVVKENVVMPLMGEKMGVVVQTICAVIIGFTVGLMFAWRVAIAMTVVQLIIIVCFNIRGVLKIMPSKNIKIHDD 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01710 403 SUPERFAMILY PAH2 domain 64 136 IPR036600 GO:0006355
Phco5g01710 403 Gene3D ABC transporter type 1, transmembrane domain 212 399 IPR036640 GO:0005524|GO:0016020
Phco5g01710 403 ProSiteProfiles PAH domain profile. 140 214 IPR003822 GO:0006355
Phco5g01710 403 FunFam Paired amphipathic helix protein Sin3 73 135 - -
Phco5g01710 403 Gene3D Paired amphipathic helix 73 135 IPR036600 GO:0006355
Phco5g01710 403 Gene3D Paired amphipathic helix 147 211 IPR036600 GO:0006355
Phco5g01710 403 Pfam Paired amphipathic helix repeat 90 134 IPR003822 GO:0006355
Phco5g01710 403 Pfam Paired amphipathic helix repeat 168 209 IPR003822 GO:0006355
Phco5g01710 403 SUPERFAMILY ABC transporter transmembrane region 235 386 IPR036640 GO:0005524|GO:0016020
Phco5g01710 403 ProSiteProfiles PAH domain profile. 67 137 IPR003822 GO:0006355
Phco5g01710 403 PANTHER SIN3B-RELATED 71 216 IPR039774 GO:0003714
Phco5g01710 403 SUPERFAMILY PAH2 domain 151 212 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01710 Phco-Chr5 53230879 53235711 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco5g01710 PAH 1.3e-07 No_clan